Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19570

Experiment: soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotidesABZR87_RS19565 and ABZR87_RS19570 are separated by 91 nucleotidesABZR87_RS19570 and ABZR87_RS19575 are separated by 15 nucleotides ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394 _RS19560 ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720 _RS19565 ABZR87_RS19570: ABZR87_RS19570 - TadG family pilus assembly protein, at 761,812 to 763,455 _RS19570 ABZR87_RS19575: ABZR87_RS19575 - sigma-54-dependent Fis family transcriptional regulator, at 763,471 to 764,886 _RS19575 Position (kb) 761 762 763 764Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 761.568 kb on + strand, within ABZR87_RS19565at 761.568 kb on + strand, within ABZR87_RS19565at 761.568 kb on + strand, within ABZR87_RS19565at 761.568 kb on + strand, within ABZR87_RS19565at 761.569 kb on - strand, within ABZR87_RS19565at 761.569 kb on - strand, within ABZR87_RS19565at 761.569 kb on - strand, within ABZR87_RS19565at 761.616 kb on + strand, within ABZR87_RS19565at 761.881 kb on + strandat 761.882 kb on - strandat 762.064 kb on + strand, within ABZR87_RS19570at 762.064 kb on + strand, within ABZR87_RS19570at 762.064 kb on + strand, within ABZR87_RS19570at 762.065 kb on - strand, within ABZR87_RS19570at 762.065 kb on - strand, within ABZR87_RS19570at 762.065 kb on - strand, within ABZR87_RS19570at 762.065 kb on - strand, within ABZR87_RS19570at 762.096 kb on + strand, within ABZR87_RS19570at 762.096 kb on + strand, within ABZR87_RS19570at 762.097 kb on - strand, within ABZR87_RS19570at 762.097 kb on - strand, within ABZR87_RS19570at 762.097 kb on - strand, within ABZR87_RS19570at 762.097 kb on - strand, within ABZR87_RS19570at 762.238 kb on - strand, within ABZR87_RS19570at 762.305 kb on - strand, within ABZR87_RS19570at 762.458 kb on + strand, within ABZR87_RS19570at 762.459 kb on - strand, within ABZR87_RS19570at 762.526 kb on - strand, within ABZR87_RS19570at 762.526 kb on - strand, within ABZR87_RS19570at 762.526 kb on - strand, within ABZR87_RS19570at 762.839 kb on + strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.840 kb on - strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.876 kb on + strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.877 kb on - strand, within ABZR87_RS19570at 762.995 kb on + strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.996 kb on - strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 762.999 kb on + strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.000 kb on - strand, within ABZR87_RS19570at 763.017 kb on + strand, within ABZR87_RS19570at 763.017 kb on + strand, within ABZR87_RS19570at 763.017 kb on + strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.018 kb on - strand, within ABZR87_RS19570at 763.189 kb on - strand, within ABZR87_RS19570at 763.189 kb on - strand, within ABZR87_RS19570at 763.229 kb on + strand, within ABZR87_RS19570at 763.370 kb on + strandat 763.451 kb on - strandat 763.451 kb on - strandat 763.677 kb on + strand, within ABZR87_RS19575at 763.677 kb on + strand, within ABZR87_RS19575at 763.677 kb on + strand, within ABZR87_RS19575at 763.769 kb on - strand, within ABZR87_RS19575at 763.769 kb on - strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.774 kb on + strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.775 kb on - strand, within ABZR87_RS19575at 763.960 kb on + strand, within ABZR87_RS19575at 763.961 kb on - strand, within ABZR87_RS19575at 763.961 kb on - strand, within ABZR87_RS19575at 764.128 kb on + strand, within ABZR87_RS19575at 764.128 kb on + strand, within ABZR87_RS19575at 764.128 kb on + strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.129 kb on - strand, within ABZR87_RS19575at 764.143 kb on + strand, within ABZR87_RS19575at 764.203 kb on + strand, within ABZR87_RS19575at 764.204 kb on - strand, within ABZR87_RS19575at 764.204 kb on - strand, within ABZR87_RS19575at 764.356 kb on + strand, within ABZR87_RS19575at 764.356 kb on + strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575at 764.357 kb on - strand, within ABZR87_RS19575

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 1; outgrowth in LB
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761,568 + ABZR87_RS19565 0.54 +1.4
761,568 + ABZR87_RS19565 0.54 +1.2
761,568 + ABZR87_RS19565 0.54 +1.1
761,568 + ABZR87_RS19565 0.54 +0.7
761,569 - ABZR87_RS19565 0.54 +2.0
761,569 - ABZR87_RS19565 0.54 +1.9
761,569 - ABZR87_RS19565 0.54 +1.1
761,616 + ABZR87_RS19565 0.68 +0.7
761,881 + +1.2
761,882 - +2.1
762,064 + ABZR87_RS19570 0.15 -0.1
762,064 + ABZR87_RS19570 0.15 +1.5
762,064 + ABZR87_RS19570 0.15 +1.0
762,065 - ABZR87_RS19570 0.15 +1.2
762,065 - ABZR87_RS19570 0.15 +1.6
762,065 - ABZR87_RS19570 0.15 +1.2
762,065 - ABZR87_RS19570 0.15 +0.9
762,096 + ABZR87_RS19570 0.17 +1.0
762,096 + ABZR87_RS19570 0.17 +1.5
762,097 - ABZR87_RS19570 0.17 +1.1
762,097 - ABZR87_RS19570 0.17 +1.1
762,097 - ABZR87_RS19570 0.17 +0.6
762,097 - ABZR87_RS19570 0.17 +0.9
762,238 - ABZR87_RS19570 0.26 +1.6
762,305 - ABZR87_RS19570 0.30 +1.2
762,458 + ABZR87_RS19570 0.39 +0.5
762,459 - ABZR87_RS19570 0.39 +0.7
762,526 - ABZR87_RS19570 0.43 +0.5
762,526 - ABZR87_RS19570 0.43 +1.6
762,526 - ABZR87_RS19570 0.43 +1.2
762,839 + ABZR87_RS19570 0.62 +1.6
762,840 - ABZR87_RS19570 0.63 +1.9
762,840 - ABZR87_RS19570 0.63 +1.5
762,840 - ABZR87_RS19570 0.63 +1.6
762,840 - ABZR87_RS19570 0.63 +2.1
762,840 - ABZR87_RS19570 0.63 +1.7
762,876 + ABZR87_RS19570 0.65 +2.0
762,876 + ABZR87_RS19570 0.65 +1.2
762,876 + ABZR87_RS19570 0.65 +1.3
762,876 + ABZR87_RS19570 0.65 +1.2
762,876 + ABZR87_RS19570 0.65 +1.5
762,877 - ABZR87_RS19570 0.65 +0.8
762,877 - ABZR87_RS19570 0.65 +1.5
762,877 - ABZR87_RS19570 0.65 +0.8
762,877 - ABZR87_RS19570 0.65 +1.5
762,995 + ABZR87_RS19570 0.72 +0.5
762,996 - ABZR87_RS19570 0.72 +1.2
762,996 - ABZR87_RS19570 0.72 +1.2
762,996 - ABZR87_RS19570 0.72 +2.1
762,996 - ABZR87_RS19570 0.72 +0.6
762,996 - ABZR87_RS19570 0.72 +1.8
762,999 + ABZR87_RS19570 0.72 +1.3
762,999 + ABZR87_RS19570 0.72 +0.4
762,999 + ABZR87_RS19570 0.72 +1.3
762,999 + ABZR87_RS19570 0.72 +0.6
762,999 + ABZR87_RS19570 0.72 +0.6
762,999 + ABZR87_RS19570 0.72 -0.2
762,999 + ABZR87_RS19570 0.72 +0.3
763,000 - ABZR87_RS19570 0.72 +1.2
763,000 - ABZR87_RS19570 0.72 +1.3
763,000 - ABZR87_RS19570 0.72 +0.5
763,000 - ABZR87_RS19570 0.72 +1.0
763,000 - ABZR87_RS19570 0.72 +1.3
763,000 - ABZR87_RS19570 0.72 +1.2
763,017 + ABZR87_RS19570 0.73 -1.0
763,017 + ABZR87_RS19570 0.73 +0.3
763,017 + ABZR87_RS19570 0.73 +0.1
763,018 - ABZR87_RS19570 0.73 +1.2
763,018 - ABZR87_RS19570 0.73 +0.0
763,018 - ABZR87_RS19570 0.73 +0.2
763,018 - ABZR87_RS19570 0.73 +1.9
763,018 - ABZR87_RS19570 0.73 +0.9
763,018 - ABZR87_RS19570 0.73 +0.9
763,189 - ABZR87_RS19570 0.84 +1.3
763,189 - ABZR87_RS19570 0.84 +1.4
763,229 + ABZR87_RS19570 0.86 +1.5
763,370 + +4.4
763,451 - -0.8
763,451 - +1.6
763,677 + ABZR87_RS19575 0.15 +0.6
763,677 + ABZR87_RS19575 0.15 +0.2
763,677 + ABZR87_RS19575 0.15 -0.1
763,769 - ABZR87_RS19575 0.21 -1.0
763,769 - ABZR87_RS19575 0.21 +0.0
763,774 + ABZR87_RS19575 0.21 +0.1
763,774 + ABZR87_RS19575 0.21 -1.0
763,774 + ABZR87_RS19575 0.21 +1.5
763,774 + ABZR87_RS19575 0.21 +0.4
763,774 + ABZR87_RS19575 0.21 -0.3
763,774 + ABZR87_RS19575 0.21 +1.4
763,774 + ABZR87_RS19575 0.21 -0.5
763,774 + ABZR87_RS19575 0.21 -1.3
763,774 + ABZR87_RS19575 0.21 -0.6
763,774 + ABZR87_RS19575 0.21 +0.3
763,774 + ABZR87_RS19575 0.21 -0.7
763,775 - ABZR87_RS19575 0.21 +0.4
763,775 - ABZR87_RS19575 0.21 +0.6
763,775 - ABZR87_RS19575 0.21 -1.1
763,775 - ABZR87_RS19575 0.21 +0.1
763,775 - ABZR87_RS19575 0.21 -0.5
763,775 - ABZR87_RS19575 0.21 -0.4
763,775 - ABZR87_RS19575 0.21 -0.1
763,775 - ABZR87_RS19575 0.21 +0.2
763,775 - ABZR87_RS19575 0.21 -0.2
763,775 - ABZR87_RS19575 0.21 -0.2
763,775 - ABZR87_RS19575 0.21 -0.5
763,775 - ABZR87_RS19575 0.21 +0.5
763,960 + ABZR87_RS19575 0.35 -0.1
763,961 - ABZR87_RS19575 0.35 -0.5
763,961 - ABZR87_RS19575 0.35 +0.2
764,128 + ABZR87_RS19575 0.46 -0.9
764,128 + ABZR87_RS19575 0.46 -2.1
764,128 + ABZR87_RS19575 0.46 -0.3
764,129 - ABZR87_RS19575 0.46 -2.2
764,129 - ABZR87_RS19575 0.46 -0.5
764,129 - ABZR87_RS19575 0.46 -2.5
764,129 - ABZR87_RS19575 0.46 -0.7
764,129 - ABZR87_RS19575 0.46 -2.3
764,143 + ABZR87_RS19575 0.47 +0.3
764,203 + ABZR87_RS19575 0.52 +0.9
764,204 - ABZR87_RS19575 0.52 -0.6
764,204 - ABZR87_RS19575 0.52 +0.7
764,356 + ABZR87_RS19575 0.62 -0.9
764,356 + ABZR87_RS19575 0.62 -1.4
764,357 - ABZR87_RS19575 0.63 +0.1
764,357 - ABZR87_RS19575 0.63 -0.9
764,357 - ABZR87_RS19575 0.63 -0.1
764,357 - ABZR87_RS19575 0.63 -0.6
764,357 - ABZR87_RS19575 0.63 -1.1
764,357 - ABZR87_RS19575 0.63 -0.8

Or see this region's nucleotide sequence