Experiment: soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17980 and ABZR87_RS17985 are separated by 89 nucleotides ABZR87_RS17985 and ABZR87_RS17990 are separated by 139 nucleotides ABZR87_RS17990 and ABZR87_RS17995 are separated by 149 nucleotides ABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotides
ABZR87_RS17980: ABZR87_RS17980 - CheR family methyltransferase, at 389,792 to 390,670
_RS17980
ABZR87_RS17985: ABZR87_RS17985 - chemoreceptor glutamine deamidase CheD, at 390,760 to 391,377
_RS17985
ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638
_RS17990
ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189
_RS17995
ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857
_RS18000
Position (kb) 391
392
393 Strain fitness (log2 ratio) -2
-1
0
1 at 390.626 kb on + strand at 390.799 kb on + strand at 390.800 kb on - strand at 390.800 kb on - strand at 390.803 kb on - strand at 390.803 kb on - strand at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.851 kb on - strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.119 kb on + strand, within ABZR87_RS17985 at 391.120 kb on - strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.432 kb on + strand at 391.433 kb on - strand at 391.433 kb on - strand at 392.261 kb on + strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.519 kb on + strand, within ABZR87_RS17990 at 392.637 kb on - strand at 392.655 kb on + strand at 392.655 kb on + strand at 392.656 kb on - strand at 392.656 kb on - strand at 392.730 kb on - strand at 392.766 kb on + strand at 392.854 kb on - strand, within ABZR87_RS17995 at 393.126 kb on + strand, within ABZR87_RS17995 at 393.127 kb on - strand, within ABZR87_RS17995 at 393.378 kb on + strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 1; outgrowth in LB remove 390,626 + -0.6 390,799 + -0.5 390,800 - -1.0 390,800 - -0.9 390,803 - -0.6 390,803 - -1.9 390,850 + ABZR87_RS17985 0.15 -0.2 390,850 + ABZR87_RS17985 0.15 -0.1 390,850 + ABZR87_RS17985 0.15 -1.4 390,851 - ABZR87_RS17985 0.15 +0.0 391,045 + ABZR87_RS17985 0.46 +0.2 391,045 + ABZR87_RS17985 0.46 -0.8 391,045 + ABZR87_RS17985 0.46 +0.9 391,045 + ABZR87_RS17985 0.46 -0.6 391,045 + ABZR87_RS17985 0.46 +0.5 391,045 + ABZR87_RS17985 0.46 +0.3 391,046 - ABZR87_RS17985 0.46 +1.2 391,046 - ABZR87_RS17985 0.46 -0.9 391,046 - ABZR87_RS17985 0.46 -0.1 391,119 + ABZR87_RS17985 0.58 +0.3 391,120 - ABZR87_RS17985 0.58 -0.4 391,228 + ABZR87_RS17985 0.76 -0.5 391,228 + ABZR87_RS17985 0.76 -0.3 391,228 + ABZR87_RS17985 0.76 -0.7 391,313 - ABZR87_RS17985 0.89 -0.1 391,313 - ABZR87_RS17985 0.89 +0.1 391,376 - +0.0 391,376 - +0.3 391,376 - -0.5 391,376 - +0.6 391,376 - -1.1 391,432 + -0.3 391,433 - +0.3 391,433 - -0.4 392,261 + ABZR87_RS17990 0.66 -0.7 392,262 - ABZR87_RS17990 0.66 -0.2 392,262 - ABZR87_RS17990 0.66 -0.8 392,312 + ABZR87_RS17990 0.71 +0.2 392,312 + ABZR87_RS17990 0.71 -0.0 392,313 - ABZR87_RS17990 0.71 -0.6 392,313 - ABZR87_RS17990 0.71 +0.7 392,313 - ABZR87_RS17990 0.71 -1.9 392,313 - ABZR87_RS17990 0.71 -0.2 392,313 - ABZR87_RS17990 0.71 +0.2 392,483 + ABZR87_RS17990 0.86 +0.7 392,483 + ABZR87_RS17990 0.86 -1.7 392,484 - ABZR87_RS17990 0.86 +0.5 392,484 - ABZR87_RS17990 0.86 +0.3 392,484 - ABZR87_RS17990 0.86 -0.2 392,484 - ABZR87_RS17990 0.86 +0.3 392,519 + ABZR87_RS17990 0.89 +0.6 392,637 - -0.5 392,655 + +0.3 392,655 + +1.2 392,656 - +0.0 392,656 - -0.2 392,730 - +0.4 392,766 + -0.6 392,854 - ABZR87_RS17995 0.16 +1.3 393,126 + ABZR87_RS17995 0.84 +1.4 393,127 - ABZR87_RS17995 0.84 +0.6 393,378 + ABZR87_RS18000 0.28 -0.3 393,379 - ABZR87_RS18000 0.28 +0.1 393,379 - ABZR87_RS18000 0.28 -0.8 393,379 - ABZR87_RS18000 0.28 +0.2 393,379 - ABZR87_RS18000 0.28 +0.3
Or see this region's nucleotide sequence