Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08460

Experiment: soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08455 and ABZR87_RS08460 are separated by 27 nucleotidesABZR87_RS08460 and ABZR87_RS08465 are separated by 19 nucleotidesABZR87_RS08465 and ABZR87_RS08470 are separated by 19 nucleotides ABZR87_RS08455: ABZR87_RS08455 - YjgN family protein, at 1,796,127 to 1,797,209 _RS08455 ABZR87_RS08460: ABZR87_RS08460 - M48 family metallopeptidase, at 1,797,237 to 1,798,322 _RS08460 ABZR87_RS08465: ABZR87_RS08465 - GtrA family protein, at 1,798,342 to 1,798,770 _RS08465 ABZR87_RS08470: ABZR87_RS08470 - glycosyltransferase family 2 protein, at 1,798,790 to 1,799,863 _RS08470 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -3 -2 -1 0 1at 1796.286 kb on + strand, within ABZR87_RS08455at 1796.286 kb on + strand, within ABZR87_RS08455at 1796.286 kb on + strand, within ABZR87_RS08455at 1796.287 kb on - strand, within ABZR87_RS08455at 1796.287 kb on - strand, within ABZR87_RS08455at 1796.319 kb on + strand, within ABZR87_RS08455at 1796.320 kb on - strand, within ABZR87_RS08455at 1796.320 kb on - strand, within ABZR87_RS08455at 1796.320 kb on - strand, within ABZR87_RS08455at 1796.362 kb on - strand, within ABZR87_RS08455at 1796.362 kb on - strand, within ABZR87_RS08455at 1796.506 kb on + strand, within ABZR87_RS08455at 1796.506 kb on + strand, within ABZR87_RS08455at 1796.507 kb on - strand, within ABZR87_RS08455at 1796.586 kb on + strand, within ABZR87_RS08455at 1796.586 kb on + strand, within ABZR87_RS08455at 1796.586 kb on + strand, within ABZR87_RS08455at 1796.586 kb on + strand, within ABZR87_RS08455at 1796.586 kb on + strand, within ABZR87_RS08455at 1796.587 kb on - strand, within ABZR87_RS08455at 1796.632 kb on - strand, within ABZR87_RS08455at 1796.632 kb on - strand, within ABZR87_RS08455at 1796.735 kb on + strand, within ABZR87_RS08455at 1796.736 kb on + strand, within ABZR87_RS08455at 1796.736 kb on + strand, within ABZR87_RS08455at 1796.737 kb on - strand, within ABZR87_RS08455at 1796.737 kb on - strand, within ABZR87_RS08455at 1796.737 kb on - strand, within ABZR87_RS08455at 1796.737 kb on - strand, within ABZR87_RS08455at 1796.737 kb on - strand, within ABZR87_RS08455at 1796.745 kb on + strand, within ABZR87_RS08455at 1796.745 kb on + strand, within ABZR87_RS08455at 1796.745 kb on + strand, within ABZR87_RS08455at 1796.746 kb on - strand, within ABZR87_RS08455at 1796.771 kb on - strand, within ABZR87_RS08455at 1796.771 kb on - strand, within ABZR87_RS08455at 1796.880 kb on + strand, within ABZR87_RS08455at 1796.880 kb on + strand, within ABZR87_RS08455at 1796.880 kb on + strand, within ABZR87_RS08455at 1796.880 kb on + strand, within ABZR87_RS08455at 1796.880 kb on + strand, within ABZR87_RS08455at 1796.881 kb on - strand, within ABZR87_RS08455at 1796.881 kb on - strand, within ABZR87_RS08455at 1796.881 kb on - strand, within ABZR87_RS08455at 1796.881 kb on - strand, within ABZR87_RS08455at 1796.881 kb on - strand, within ABZR87_RS08455at 1796.881 kb on - strand, within ABZR87_RS08455at 1796.907 kb on + strand, within ABZR87_RS08455at 1796.908 kb on - strand, within ABZR87_RS08455at 1797.081 kb on + strand, within ABZR87_RS08455at 1797.082 kb on - strand, within ABZR87_RS08455at 1797.082 kb on - strand, within ABZR87_RS08455at 1797.082 kb on - strand, within ABZR87_RS08455at 1797.186 kb on + strandat 1797.208 kb on - strandat 1797.266 kb on + strandat 1797.362 kb on + strand, within ABZR87_RS08460at 1797.363 kb on - strand, within ABZR87_RS08460at 1797.586 kb on - strand, within ABZR87_RS08460at 1797.620 kb on + strand, within ABZR87_RS08460at 1797.620 kb on + strand, within ABZR87_RS08460at 1797.620 kb on + strand, within ABZR87_RS08460at 1797.620 kb on + strand, within ABZR87_RS08460at 1797.621 kb on - strand, within ABZR87_RS08460at 1797.777 kb on + strand, within ABZR87_RS08460at 1797.778 kb on - strand, within ABZR87_RS08460at 1797.778 kb on - strand, within ABZR87_RS08460at 1797.778 kb on - strand, within ABZR87_RS08460at 1797.927 kb on + strand, within ABZR87_RS08460at 1797.928 kb on - strand, within ABZR87_RS08460at 1798.059 kb on + strand, within ABZR87_RS08460at 1798.060 kb on - strand, within ABZR87_RS08460at 1798.060 kb on - strand, within ABZR87_RS08460at 1798.060 kb on - strand, within ABZR87_RS08460at 1798.081 kb on - strand, within ABZR87_RS08460at 1798.334 kb on + strandat 1798.335 kb on - strandat 1798.335 kb on - strandat 1798.335 kb on - strandat 1798.422 kb on - strand, within ABZR87_RS08465at 1798.422 kb on - strand, within ABZR87_RS08465at 1798.494 kb on - strand, within ABZR87_RS08465at 1798.914 kb on + strand, within ABZR87_RS08470at 1798.915 kb on - strand, within ABZR87_RS08470at 1798.933 kb on - strand, within ABZR87_RS08470at 1798.933 kb on - strand, within ABZR87_RS08470at 1798.933 kb on - strand, within ABZR87_RS08470at 1798.933 kb on - strand, within ABZR87_RS08470at 1798.959 kb on + strand, within ABZR87_RS08470at 1798.959 kb on + strand, within ABZR87_RS08470at 1798.959 kb on + strand, within ABZR87_RS08470at 1798.960 kb on - strand, within ABZR87_RS08470at 1798.960 kb on - strand, within ABZR87_RS08470at 1798.974 kb on + strand, within ABZR87_RS08470at 1798.975 kb on - strand, within ABZR87_RS08470at 1799.033 kb on + strand, within ABZR87_RS08470at 1799.046 kb on + strand, within ABZR87_RS08470at 1799.101 kb on - strand, within ABZR87_RS08470at 1799.136 kb on + strand, within ABZR87_RS08470at 1799.136 kb on + strand, within ABZR87_RS08470at 1799.136 kb on + strand, within ABZR87_RS08470at 1799.137 kb on - strand, within ABZR87_RS08470at 1799.137 kb on - strand, within ABZR87_RS08470at 1799.137 kb on - strand, within ABZR87_RS08470at 1799.251 kb on - strand, within ABZR87_RS08470at 1799.251 kb on - strand, within ABZR87_RS08470

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 1; outgrowth in LB
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1,796,286 + ABZR87_RS08455 0.15 +0.1
1,796,286 + ABZR87_RS08455 0.15 +0.3
1,796,286 + ABZR87_RS08455 0.15 +0.2
1,796,287 - ABZR87_RS08455 0.15 +0.5
1,796,287 - ABZR87_RS08455 0.15 +0.7
1,796,319 + ABZR87_RS08455 0.18 +0.7
1,796,320 - ABZR87_RS08455 0.18 -0.8
1,796,320 - ABZR87_RS08455 0.18 -0.3
1,796,320 - ABZR87_RS08455 0.18 +0.8
1,796,362 - ABZR87_RS08455 0.22 +1.0
1,796,362 - ABZR87_RS08455 0.22 +0.5
1,796,506 + ABZR87_RS08455 0.35 +1.0
1,796,506 + ABZR87_RS08455 0.35 +1.0
1,796,507 - ABZR87_RS08455 0.35 -0.0
1,796,586 + ABZR87_RS08455 0.42 +1.2
1,796,586 + ABZR87_RS08455 0.42 +0.8
1,796,586 + ABZR87_RS08455 0.42 -0.6
1,796,586 + ABZR87_RS08455 0.42 +0.7
1,796,586 + ABZR87_RS08455 0.42 -0.2
1,796,587 - ABZR87_RS08455 0.42 +0.0
1,796,632 - ABZR87_RS08455 0.47 -0.6
1,796,632 - ABZR87_RS08455 0.47 +0.9
1,796,735 + ABZR87_RS08455 0.56 -0.2
1,796,736 + ABZR87_RS08455 0.56 +0.1
1,796,736 + ABZR87_RS08455 0.56 -0.3
1,796,737 - ABZR87_RS08455 0.56 +0.3
1,796,737 - ABZR87_RS08455 0.56 -1.2
1,796,737 - ABZR87_RS08455 0.56 +0.5
1,796,737 - ABZR87_RS08455 0.56 +0.2
1,796,737 - ABZR87_RS08455 0.56 -1.0
1,796,745 + ABZR87_RS08455 0.57 -0.1
1,796,745 + ABZR87_RS08455 0.57 +0.6
1,796,745 + ABZR87_RS08455 0.57 -0.4
1,796,746 - ABZR87_RS08455 0.57 -0.1
1,796,771 - ABZR87_RS08455 0.59 +0.3
1,796,771 - ABZR87_RS08455 0.59 +0.3
1,796,880 + ABZR87_RS08455 0.70 -1.6
1,796,880 + ABZR87_RS08455 0.70 +1.5
1,796,880 + ABZR87_RS08455 0.70 -0.3
1,796,880 + ABZR87_RS08455 0.70 +0.6
1,796,880 + ABZR87_RS08455 0.70 +1.0
1,796,881 - ABZR87_RS08455 0.70 -0.7
1,796,881 - ABZR87_RS08455 0.70 +0.2
1,796,881 - ABZR87_RS08455 0.70 -1.1
1,796,881 - ABZR87_RS08455 0.70 -0.8
1,796,881 - ABZR87_RS08455 0.70 +1.0
1,796,881 - ABZR87_RS08455 0.70 -0.9
1,796,907 + ABZR87_RS08455 0.72 -0.3
1,796,908 - ABZR87_RS08455 0.72 +0.2
1,797,081 + ABZR87_RS08455 0.88 +0.4
1,797,082 - ABZR87_RS08455 0.88 +0.3
1,797,082 - ABZR87_RS08455 0.88 +0.6
1,797,082 - ABZR87_RS08455 0.88 +0.5
1,797,186 + +0.8
1,797,208 - +1.3
1,797,266 + -0.4
1,797,362 + ABZR87_RS08460 0.12 +1.3
1,797,363 - ABZR87_RS08460 0.12 -0.0
1,797,586 - ABZR87_RS08460 0.32 -0.9
1,797,620 + ABZR87_RS08460 0.35 +0.2
1,797,620 + ABZR87_RS08460 0.35 -2.3
1,797,620 + ABZR87_RS08460 0.35 +0.8
1,797,620 + ABZR87_RS08460 0.35 -0.4
1,797,621 - ABZR87_RS08460 0.35 +1.1
1,797,777 + ABZR87_RS08460 0.50 +1.1
1,797,778 - ABZR87_RS08460 0.50 +0.3
1,797,778 - ABZR87_RS08460 0.50 -0.8
1,797,778 - ABZR87_RS08460 0.50 +0.9
1,797,927 + ABZR87_RS08460 0.64 +0.9
1,797,928 - ABZR87_RS08460 0.64 +0.4
1,798,059 + ABZR87_RS08460 0.76 -0.9
1,798,060 - ABZR87_RS08460 0.76 +0.4
1,798,060 - ABZR87_RS08460 0.76 +0.4
1,798,060 - ABZR87_RS08460 0.76 +0.9
1,798,081 - ABZR87_RS08460 0.78 +0.1
1,798,334 + +0.6
1,798,335 - -0.6
1,798,335 - -0.6
1,798,335 - -0.4
1,798,422 - ABZR87_RS08465 0.19 +0.4
1,798,422 - ABZR87_RS08465 0.19 +0.7
1,798,494 - ABZR87_RS08465 0.35 -0.1
1,798,914 + ABZR87_RS08470 0.12 +0.6
1,798,915 - ABZR87_RS08470 0.12 -1.2
1,798,933 - ABZR87_RS08470 0.13 +0.1
1,798,933 - ABZR87_RS08470 0.13 +0.5
1,798,933 - ABZR87_RS08470 0.13 +0.5
1,798,933 - ABZR87_RS08470 0.13 -1.0
1,798,959 + ABZR87_RS08470 0.16 -1.1
1,798,959 + ABZR87_RS08470 0.16 -2.8
1,798,959 + ABZR87_RS08470 0.16 +0.1
1,798,960 - ABZR87_RS08470 0.16 +0.0
1,798,960 - ABZR87_RS08470 0.16 +1.2
1,798,974 + ABZR87_RS08470 0.17 +0.8
1,798,975 - ABZR87_RS08470 0.17 -0.9
1,799,033 + ABZR87_RS08470 0.23 -0.9
1,799,046 + ABZR87_RS08470 0.24 +0.4
1,799,101 - ABZR87_RS08470 0.29 +1.6
1,799,136 + ABZR87_RS08470 0.32 -1.3
1,799,136 + ABZR87_RS08470 0.32 -0.8
1,799,136 + ABZR87_RS08470 0.32 +0.1
1,799,137 - ABZR87_RS08470 0.32 +0.2
1,799,137 - ABZR87_RS08470 0.32 +1.0
1,799,137 - ABZR87_RS08470 0.32 -0.0
1,799,251 - ABZR87_RS08470 0.43 +0.1
1,799,251 - ABZR87_RS08470 0.43 +0.6

Or see this region's nucleotide sequence