Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06155

Experiment: soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06150 and ABZR87_RS06155 are separated by 22 nucleotidesABZR87_RS06155 and ABZR87_RS06160 are separated by 210 nucleotides ABZR87_RS06150: ABZR87_RS06150 - NADP-dependent oxidoreductase, at 1,310,753 to 1,311,784 _RS06150 ABZR87_RS06155: ABZR87_RS06155 - DUF1254 domain-containing protein, at 1,311,807 to 1,313,279 _RS06155 ABZR87_RS06160: ABZR87_RS06160 - nitronate monooxygenase family protein, at 1,313,490 to 1,314,473 _RS06160 Position (kb) 1311 1312 1313 1314Strain fitness (log2 ratio) -2 -1 0 1 2at 1310.884 kb on + strand, within ABZR87_RS06150at 1310.885 kb on - strand, within ABZR87_RS06150at 1310.885 kb on - strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.892 kb on - strand, within ABZR87_RS06150at 1310.892 kb on - strand, within ABZR87_RS06150at 1310.892 kb on - strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.986 kb on + strand, within ABZR87_RS06150at 1310.986 kb on + strand, within ABZR87_RS06150at 1311.068 kb on + strand, within ABZR87_RS06150at 1311.068 kb on + strand, within ABZR87_RS06150at 1311.068 kb on + strand, within ABZR87_RS06150at 1311.069 kb on - strand, within ABZR87_RS06150at 1311.069 kb on - strand, within ABZR87_RS06150at 1311.069 kb on - strand, within ABZR87_RS06150at 1311.109 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.165 kb on - strand, within ABZR87_RS06150at 1311.165 kb on - strand, within ABZR87_RS06150at 1311.317 kb on + strand, within ABZR87_RS06150at 1311.416 kb on + strand, within ABZR87_RS06150at 1311.509 kb on + strand, within ABZR87_RS06150at 1311.509 kb on + strand, within ABZR87_RS06150at 1311.510 kb on - strand, within ABZR87_RS06150at 1311.510 kb on - strand, within ABZR87_RS06150at 1311.808 kb on + strandat 1311.834 kb on + strandat 1311.835 kb on - strandat 1312.138 kb on + strand, within ABZR87_RS06155at 1312.138 kb on + strand, within ABZR87_RS06155at 1312.138 kb on + strand, within ABZR87_RS06155at 1312.138 kb on + strand, within ABZR87_RS06155at 1312.139 kb on - strand, within ABZR87_RS06155at 1312.139 kb on - strand, within ABZR87_RS06155at 1312.139 kb on - strand, within ABZR87_RS06155at 1312.255 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.514 kb on - strand, within ABZR87_RS06155at 1312.808 kb on - strand, within ABZR87_RS06155at 1312.808 kb on - strand, within ABZR87_RS06155at 1312.971 kb on + strand, within ABZR87_RS06155at 1312.972 kb on - strand, within ABZR87_RS06155at 1313.029 kb on - strand, within ABZR87_RS06155at 1313.098 kb on + strand, within ABZR87_RS06155at 1313.099 kb on - strand, within ABZR87_RS06155at 1313.099 kb on - strand, within ABZR87_RS06155at 1313.104 kb on + strand, within ABZR87_RS06155at 1313.105 kb on - strand, within ABZR87_RS06155at 1313.105 kb on - strand, within ABZR87_RS06155at 1313.105 kb on - strand, within ABZR87_RS06155at 1313.180 kb on + strandat 1313.181 kb on - strandat 1313.357 kb on + strandat 1313.358 kb on - strandat 1313.419 kb on + strandat 1313.419 kb on + strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.534 kb on - strandat 1313.728 kb on + strand, within ABZR87_RS06160at 1313.728 kb on + strand, within ABZR87_RS06160at 1313.728 kb on + strand, within ABZR87_RS06160at 1313.729 kb on - strand, within ABZR87_RS06160at 1313.729 kb on - strand, within ABZR87_RS06160at 1313.761 kb on + strand, within ABZR87_RS06160at 1313.761 kb on + strand, within ABZR87_RS06160at 1313.761 kb on + strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.803 kb on + strand, within ABZR87_RS06160at 1313.803 kb on + strand, within ABZR87_RS06160at 1313.804 kb on - strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.095 kb on - strand, within ABZR87_RS06160at 1314.095 kb on - strand, within ABZR87_RS06160at 1314.268 kb on + strand, within ABZR87_RS06160

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 1; outgrowth in LB
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1,310,884 + ABZR87_RS06150 0.13 -0.2
1,310,885 - ABZR87_RS06150 0.13 -0.2
1,310,885 - ABZR87_RS06150 0.13 +0.3
1,310,891 + ABZR87_RS06150 0.13 -0.8
1,310,891 + ABZR87_RS06150 0.13 +0.1
1,310,891 + ABZR87_RS06150 0.13 -0.5
1,310,891 + ABZR87_RS06150 0.13 +0.5
1,310,891 + ABZR87_RS06150 0.13 -0.5
1,310,892 - ABZR87_RS06150 0.13 -0.2
1,310,892 - ABZR87_RS06150 0.13 +0.2
1,310,892 - ABZR87_RS06150 0.13 -0.8
1,310,909 + ABZR87_RS06150 0.15 +0.1
1,310,909 + ABZR87_RS06150 0.15 -0.3
1,310,909 + ABZR87_RS06150 0.15 -1.0
1,310,909 + ABZR87_RS06150 0.15 +0.7
1,310,909 + ABZR87_RS06150 0.15 +0.4
1,310,909 + ABZR87_RS06150 0.15 -0.9
1,310,910 - ABZR87_RS06150 0.15 -0.2
1,310,910 - ABZR87_RS06150 0.15 -0.2
1,310,910 - ABZR87_RS06150 0.15 +0.5
1,310,910 - ABZR87_RS06150 0.15 -0.2
1,310,910 - ABZR87_RS06150 0.15 -0.8
1,310,986 + ABZR87_RS06150 0.23 +0.6
1,310,986 + ABZR87_RS06150 0.23 -0.8
1,311,068 + ABZR87_RS06150 0.31 -1.1
1,311,068 + ABZR87_RS06150 0.31 -1.0
1,311,068 + ABZR87_RS06150 0.31 +1.5
1,311,069 - ABZR87_RS06150 0.31 +0.0
1,311,069 - ABZR87_RS06150 0.31 +1.7
1,311,069 - ABZR87_RS06150 0.31 -0.1
1,311,109 + ABZR87_RS06150 0.34 -0.7
1,311,164 + ABZR87_RS06150 0.40 -0.8
1,311,164 + ABZR87_RS06150 0.40 -0.2
1,311,164 + ABZR87_RS06150 0.40 -1.4
1,311,164 + ABZR87_RS06150 0.40 +0.7
1,311,165 - ABZR87_RS06150 0.40 -0.4
1,311,165 - ABZR87_RS06150 0.40 -0.2
1,311,317 + ABZR87_RS06150 0.55 -1.1
1,311,416 + ABZR87_RS06150 0.64 -0.2
1,311,509 + ABZR87_RS06150 0.73 -0.2
1,311,509 + ABZR87_RS06150 0.73 -0.9
1,311,510 - ABZR87_RS06150 0.73 -0.2
1,311,510 - ABZR87_RS06150 0.73 -1.2
1,311,808 + +0.5
1,311,834 + -0.2
1,311,835 - -0.1
1,312,138 + ABZR87_RS06155 0.22 +1.1
1,312,138 + ABZR87_RS06155 0.22 -0.1
1,312,138 + ABZR87_RS06155 0.22 -0.4
1,312,138 + ABZR87_RS06155 0.22 +0.2
1,312,139 - ABZR87_RS06155 0.23 -0.4
1,312,139 - ABZR87_RS06155 0.23 +0.4
1,312,139 - ABZR87_RS06155 0.23 -0.8
1,312,255 + ABZR87_RS06155 0.30 -0.3
1,312,513 + ABZR87_RS06155 0.48 -0.2
1,312,513 + ABZR87_RS06155 0.48 -0.3
1,312,513 + ABZR87_RS06155 0.48 +0.9
1,312,513 + ABZR87_RS06155 0.48 -1.2
1,312,514 - ABZR87_RS06155 0.48 -0.7
1,312,808 - ABZR87_RS06155 0.68 -0.7
1,312,808 - ABZR87_RS06155 0.68 -0.4
1,312,971 + ABZR87_RS06155 0.79 -0.2
1,312,972 - ABZR87_RS06155 0.79 -0.9
1,313,029 - ABZR87_RS06155 0.83 -1.5
1,313,098 + ABZR87_RS06155 0.88 -0.1
1,313,099 - ABZR87_RS06155 0.88 -0.8
1,313,099 - ABZR87_RS06155 0.88 +0.3
1,313,104 + ABZR87_RS06155 0.88 +0.4
1,313,105 - ABZR87_RS06155 0.88 -1.3
1,313,105 - ABZR87_RS06155 0.88 -1.8
1,313,105 - ABZR87_RS06155 0.88 -0.0
1,313,180 + -2.4
1,313,181 - +0.8
1,313,357 + +0.9
1,313,358 - +0.6
1,313,419 + +0.3
1,313,419 + -0.8
1,313,420 - -0.2
1,313,420 - -0.0
1,313,420 - +0.7
1,313,420 - -0.6
1,313,420 - +0.6
1,313,420 - +1.0
1,313,534 - -0.1
1,313,728 + ABZR87_RS06160 0.24 -0.1
1,313,728 + ABZR87_RS06160 0.24 +0.8
1,313,728 + ABZR87_RS06160 0.24 +1.7
1,313,729 - ABZR87_RS06160 0.24 -0.2
1,313,729 - ABZR87_RS06160 0.24 +0.5
1,313,761 + ABZR87_RS06160 0.28 +0.9
1,313,761 + ABZR87_RS06160 0.28 -1.5
1,313,761 + ABZR87_RS06160 0.28 -0.1
1,313,762 - ABZR87_RS06160 0.28 -0.8
1,313,762 - ABZR87_RS06160 0.28 +0.6
1,313,762 - ABZR87_RS06160 0.28 -0.4
1,313,762 - ABZR87_RS06160 0.28 +1.4
1,313,803 + ABZR87_RS06160 0.32 +0.3
1,313,803 + ABZR87_RS06160 0.32 -0.0
1,313,804 - ABZR87_RS06160 0.32 -0.2
1,313,854 + ABZR87_RS06160 0.37 +0.2
1,313,854 + ABZR87_RS06160 0.37 -0.5
1,313,854 + ABZR87_RS06160 0.37 +0.5
1,313,854 + ABZR87_RS06160 0.37 -0.4
1,313,855 - ABZR87_RS06160 0.37 +2.7
1,313,855 - ABZR87_RS06160 0.37 -0.7
1,313,855 - ABZR87_RS06160 0.37 +1.0
1,313,855 - ABZR87_RS06160 0.37 -0.7
1,313,855 - ABZR87_RS06160 0.37 -0.5
1,313,855 - ABZR87_RS06160 0.37 -1.4
1,313,855 - ABZR87_RS06160 0.37 +0.3
1,313,855 - ABZR87_RS06160 0.37 +0.5
1,313,855 - ABZR87_RS06160 0.37 -0.0
1,313,855 - ABZR87_RS06160 0.37 +0.7
1,314,094 + ABZR87_RS06160 0.61 +0.8
1,314,094 + ABZR87_RS06160 0.61 -0.9
1,314,094 + ABZR87_RS06160 0.61 +1.5
1,314,094 + ABZR87_RS06160 0.61 -1.0
1,314,095 - ABZR87_RS06160 0.61 -0.3
1,314,095 - ABZR87_RS06160 0.61 +0.7
1,314,268 + ABZR87_RS06160 0.79 -0.4

Or see this region's nucleotide sequence