Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3506

Experiment: Red Arabinan from sugar-beet (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet (C)
4,521,937	+		BT3505	0.70	-0.1
4,521,938	-		BT3505	0.70	-1.5
4,521,938	-		BT3505	0.70	-2.0
4,521,997	+		BT3505	0.72	-2.1
4,522,051	+		BT3505	0.74	-0.1
4,522,095	+		BT3505	0.75	+0.7
4,522,096	-		BT3505	0.75	-2.4
4,522,100	+		BT3505	0.75	-1.7
4,522,101	-		BT3505	0.75	-1.3
4,522,102	+		BT3505	0.75	+1.4
4,522,105	+		BT3505	0.76	-0.4
4,522,105	+		BT3505	0.76	-1.1
4,522,151	+		BT3505	0.77	-2.4
4,522,152	-		BT3505	0.77	-1.9
4,522,152	-		BT3505	0.77	-1.4
4,522,157	+		BT3505	0.77	-3.2
4,522,311	+		BT3505	0.82	-0.2
4,522,345	+		BT3505	0.83	-1.2
4,522,360	-		BT3505	0.84	-0.1
4,522,360	-		BT3505	0.84	-0.9
4,522,364	+		BT3505	0.84	-1.1
4,522,364	+		BT3505	0.84	-1.1
4,522,365	-		BT3505	0.84	-0.2
4,522,448	+		BT3505	0.87	-1.1
4,522,449	-		BT3505	0.87	-0.3
4,522,453	+		BT3505	0.87	-1.4
4,522,454	-		BT3505	0.87	-1.0
4,522,461	+		BT3505	0.87	+1.9
4,522,461	+		BT3505	0.87	+0.4
4,522,462	-		BT3505	0.87	-1.6
4,522,499	-		BT3505	0.88	+0.4
4,522,504	+		BT3505	0.88	-3.1
4,522,509	+		BT3505	0.89	-0.1
4,522,510	-		BT3505	0.89	-1.9
4,522,510	-		BT3505	0.89	-1.9
4,522,510	-		BT3505	0.89	-1.5
4,522,525	-		BT3505	0.89	-1.3
4,522,561	+				+0.0
4,522,562	-				-1.7
4,522,599	-				-2.5
4,522,631	-				-1.6
4,522,656	-				-1.4
4,522,687	+				-1.2
4,522,704	+				-2.2
4,522,730	-				+0.6
4,522,736	-				+1.9
4,522,740	-				+0.9
4,522,763	-				-3.3
4,522,772	-				-0.0
4,522,852	-				-2.5
4,522,859	-				+0.2
4,522,872	-				-2.0
4,522,900	+				-1.5
4,522,908	+				+1.9
4,522,976	-				-1.2
4,523,122	+		BT3506	0.11	-1.2
4,523,122	+		BT3506	0.11	-1.2
4,523,127	-		BT3506	0.12	-2.5
4,523,179	+		BT3506	0.14	-0.3
4,523,180	-		BT3506	0.14	-0.6
4,523,201	+		BT3506	0.15	-1.9
4,523,212	+		BT3506	0.16	+0.7
4,523,213	-		BT3506	0.16	-1.7
4,523,217	-		BT3506	0.16	-0.6
4,523,217	-		BT3506	0.16	-1.1
4,523,219	-		BT3506	0.16	-2.1
4,523,219	-		BT3506	0.16	-0.2
4,523,269	-		BT3506	0.18	-1.4
4,523,269	-		BT3506	0.18	-1.5
4,523,326	+		BT3506	0.21	-3.1
4,523,399	-		BT3506	0.24	+1.4
4,523,421	-		BT3506	0.25	+0.4
4,523,421	-		BT3506	0.25	-2.3
4,523,446	+		BT3506	0.27	-2.5
4,523,456	-		BT3506	0.27	+0.4
4,523,463	-		BT3506	0.27	-0.5
4,523,481	-		BT3506	0.28	-2.2
4,523,481	-		BT3506	0.28	-1.5
4,523,482	+		BT3506	0.28	-1.8
4,523,483	-		BT3506	0.28	-0.4
4,523,522	+		BT3506	0.30	-1.1
4,523,533	+		BT3506	0.31	-2.8
4,523,533	+		BT3506	0.31	-2.3
4,523,539	+		BT3506	0.31	-1.2
4,523,539	+		BT3506	0.31	-3.0
4,523,543	+		BT3506	0.31	-1.1
4,523,543	+		BT3506	0.31	-1.7
4,523,544	-		BT3506	0.31	-2.3
4,523,549	-		BT3506	0.31	-2.5
4,523,550	+		BT3506	0.31	-2.0
4,523,592	-		BT3506	0.33	-1.0
4,523,611	+		BT3506	0.34	-2.0
4,523,624	-		BT3506	0.35	-1.8
4,523,642	+		BT3506	0.36	-1.9
4,523,643	-		BT3506	0.36	-1.4
4,523,696	-		BT3506	0.38	-0.9
4,523,749	-		BT3506	0.41	-0.8
4,523,773	-		BT3506	0.42	-0.1
4,523,792	-		BT3506	0.43	-1.2
4,523,875	+		BT3506	0.47	-1.6
4,523,895	-		BT3506	0.48	-0.6
4,523,895	-		BT3506	0.48	-1.8
4,523,900	-		BT3506	0.48	-0.6
4,523,903	-		BT3506	0.48	-1.2
4,523,914	+		BT3506	0.49	-1.6
4,523,917	+		BT3506	0.49	-0.4
4,523,918	-		BT3506	0.49	-1.0
4,523,918	-		BT3506	0.49	-1.1
4,523,918	-		BT3506	0.49	-2.8
4,523,919	+		BT3506	0.49	-1.6
4,523,919	+		BT3506	0.49	-1.1
4,523,920	-		BT3506	0.49	-1.8
4,523,968	+		BT3506	0.51	-1.2
4,523,969	-		BT3506	0.51	-2.1
4,523,970	+		BT3506	0.51	-1.3
4,523,974	+		BT3506	0.52	-0.7
4,523,974	+		BT3506	0.52	+0.4
4,523,974	+		BT3506	0.52	+0.4
4,523,975	-		BT3506	0.52	-1.9
4,523,975	-		BT3506	0.52	-1.2
4,523,982	+		BT3506	0.52	+0.5
4,524,029	-		BT3506	0.54	-1.4
4,524,056	+		BT3506	0.55	-2.2
4,524,058	+		BT3506	0.55	-2.6
4,524,059	-		BT3506	0.56	-2.3
4,524,071	-		BT3506	0.56	-1.1
4,524,094	+		BT3506	0.57	-1.2
4,524,094	+		BT3506	0.57	-0.6
4,524,095	-		BT3506	0.57	-2.0
4,524,099	-				-0.6
4,524,108	+		BT3506	0.58	-1.4
4,524,109	-		BT3506	0.58	-2.2
4,524,109	-		BT3506	0.58	-1.1
4,524,116	+		BT3506	0.58	-1.2
4,524,124	+		BT3506	0.59	+1.9
4,524,130	-		BT3506	0.59	-0.4
4,524,146	-		BT3506	0.60	+0.4
4,524,146	-		BT3506	0.60	-0.4
4,524,184	+		BT3506	0.61	-0.5
4,524,185	-		BT3506	0.61	-0.4
4,524,199	-		BT3506	0.62	-2.0
4,524,273	+		BT3506	0.66	-0.9
4,524,273	+		BT3506	0.66	-0.4
4,524,274	-		BT3506	0.66	+0.9
4,524,310	+		BT3506	0.67	+1.7
4,524,311	-		BT3506	0.67	-1.1
4,524,423	-		BT3506	0.73	-1.4
4,524,431	-		BT3506	0.73	-2.4
4,524,482	+		BT3506	0.75	+1.9
4,524,483	-		BT3506	0.76	-1.8
4,524,567	-		BT3506	0.80	-1.1
4,524,571	+		BT3506	0.80	-3.6
4,524,571	+		BT3506	0.80	-0.5
4,524,572	-		BT3506	0.80	-1.5
4,524,574	-		BT3506	0.80	-1.1
4,524,574	-		BT3506	0.80	+0.7
4,524,599	+		BT3506	0.81	-1.2
4,524,604	+		BT3506	0.81	-0.8
4,524,605	-		BT3506	0.81	-2.2
4,524,616	+		BT3506	0.82	-1.1
4,524,652	+		BT3506	0.84	-0.9
4,524,653	-		BT3506	0.84	-0.4
4,524,653	-		BT3506	0.84	-0.6
4,524,713	-		BT3506	0.86	+0.4
4,524,718	+		BT3506	0.87	-1.1
4,524,739	+		BT3506	0.88	-2.3
4,524,744	+		BT3506	0.88	-0.4
4,524,745	-		BT3506	0.88	-1.8
4,524,745	-		BT3506	0.88	-0.9
4,524,822	+				-1.4
4,524,853	+				-3.0
4,524,854	-				-2.6
4,524,887	+				-2.0
4,524,888	-				-1.7
4,524,941	-				-1.1
4,524,956	-				-0.7
4,524,999	-				-2.5
4,525,018	+				-2.0
4,525,021	-				-1.2
4,525,022	+				-1.0
4,525,034	-				-2.1
4,525,038	-				-1.8
4,525,107	+				-0.1
4,525,160	+		BT3507	0.13	+0.4
4,525,160	+		BT3507	0.13	-1.6
4,525,162	+		BT3507	0.13	-1.5
4,525,162	+		BT3507	0.13	+0.1
4,525,164	+		BT3507	0.13	-1.3
4,525,164	+		BT3507	0.13	-1.5
4,525,164	+		BT3507	0.13	-2.3
4,525,165	-		BT3507	0.13	-1.1
4,525,168	+		BT3507	0.14	+2.5
4,525,274	+		BT3507	0.24	-1.8
4,525,292	-		BT3507	0.25	-3.6
4,525,307	+		BT3507	0.27	-1.1
4,525,317	-		BT3507	0.28	-2.8
4,525,327	-		BT3507	0.29	-1.9
4,525,340	+		BT3507	0.30	-0.6
4,525,341	-		BT3507	0.30	-1.2
4,525,346	+		BT3507	0.30	-0.2
4,525,355	-		BT3507	0.31	-0.9
4,525,356	+		BT3507	0.31	+0.9
4,525,359	+		BT3507	0.32	+0.2
4,525,417	+		BT3507	0.37	-1.2
4,525,433	+		BT3507	0.39	-0.1
4,525,451	+		BT3507	0.40	-0.6
4,525,476	-		BT3507	0.43	-2.3
4,525,476	-		BT3507	0.43	-1.4
4,525,493	-		BT3507	0.44	-0.6
4,525,511	-		BT3507	0.46	-1.0
4,525,530	+		BT3507	0.48	+0.2
4,525,530	+		BT3507	0.48	-2.1
4,525,535	-		BT3507	0.48	-1.2
4,525,554	+		BT3507	0.50	-1.5
4,525,554	+		BT3507	0.50	-0.4
4,525,682	+		BT3507	0.62	-0.7
4,525,707	+		BT3507	0.64	-1.2
4,525,707	+		BT3507	0.64	-0.4
4,525,708	-		BT3507	0.65	-1.3
4,525,714	+		BT3507	0.65	+1.7
4,525,715	-		BT3507	0.65	+0.3
4,525,715	-		BT3507	0.65	+0.9
4,525,763	+		BT3507	0.70	-3.0
4,525,763	+		BT3507	0.70	-0.9
4,525,764	-		BT3507	0.70	-1.3
4,525,764	-		BT3507	0.70	-0.6
4,525,773	-		BT3507	0.71	-0.8
4,525,839	-		BT3507	0.77	-1.2
4,525,864	+		BT3507	0.79	-2.4
4,525,939	-		BT3507	0.86	-1.2
4,525,946	-		BT3507	0.87	-1.4
4,525,950	-		BT3507	0.87	-0.4
4,525,976	+		BT3507	0.90	-1.2