Experiment: Red Arabinan from sugar-beet (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0362 and BT0363 are separated by 4 nucleotides BT0363 and BT0364 are separated by 12 nucleotides
BT0362: BT0362 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 435,803 to 438,952
BT0362
BT0363: BT0363 - putative outer membrane protein (NCBI ptt file), at 438,957 to 440,732
BT0363
BT0364: BT0364 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 440,745 to 443,828
BT0364
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.135 kb on + strand, within BT0362 at 438.135 kb on + strand, within BT0362 at 438.142 kb on - strand, within BT0362 at 438.209 kb on - strand, within BT0362 at 438.240 kb on - strand, within BT0362 at 438.273 kb on + strand, within BT0362 at 438.274 kb on - strand, within BT0362 at 438.277 kb on + strand, within BT0362 at 438.308 kb on - strand, within BT0362 at 438.417 kb on + strand, within BT0362 at 438.418 kb on - strand, within BT0362 at 438.418 kb on - strand, within BT0362 at 438.422 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.467 kb on + strand, within BT0362 at 438.467 kb on + strand, within BT0362 at 438.468 kb on - strand, within BT0362 at 438.610 kb on - strand, within BT0362 at 438.696 kb on - strand at 438.958 kb on + strand at 438.999 kb on + strand at 439.065 kb on - strand at 439.115 kb on + strand at 439.155 kb on + strand, within BT0363 at 439.155 kb on + strand, within BT0363 at 439.308 kb on + strand, within BT0363 at 439.351 kb on + strand, within BT0363 at 439.397 kb on - strand, within BT0363 at 439.523 kb on + strand, within BT0363 at 439.549 kb on + strand, within BT0363 at 439.708 kb on + strand, within BT0363 at 439.800 kb on + strand, within BT0363 at 439.868 kb on + strand, within BT0363 at 440.005 kb on + strand, within BT0363 at 440.081 kb on + strand, within BT0363 at 440.082 kb on - strand, within BT0363 at 440.139 kb on + strand, within BT0363 at 440.139 kb on + strand, within BT0363 at 440.143 kb on + strand, within BT0363 at 440.144 kb on - strand, within BT0363 at 440.303 kb on + strand, within BT0363 at 440.366 kb on + strand, within BT0363 at 440.367 kb on - strand, within BT0363 at 440.482 kb on + strand, within BT0363 at 440.604 kb on + strand at 440.605 kb on - strand at 440.661 kb on - strand at 440.716 kb on - strand at 440.737 kb on + strand at 440.737 kb on + strand at 440.783 kb on + strand at 440.923 kb on + strand at 441.121 kb on + strand, within BT0364 at 441.159 kb on + strand, within BT0364 at 441.221 kb on - strand, within BT0364 at 441.315 kb on + strand, within BT0364 at 441.515 kb on + strand, within BT0364 at 441.515 kb on + strand, within BT0364 at 441.674 kb on + strand, within BT0364
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet (C) remove 438,135 + BT0362 0.74 -0.5 438,135 + BT0362 0.74 -0.3 438,142 - BT0362 0.74 -1.6 438,209 - BT0362 0.76 -0.8 438,240 - BT0362 0.77 -0.5 438,273 + BT0362 0.78 -1.3 438,274 - BT0362 0.78 -2.1 438,277 + BT0362 0.79 -1.3 438,308 - BT0362 0.80 -1.1 438,417 + BT0362 0.83 -1.5 438,418 - BT0362 0.83 +2.1 438,418 - BT0362 0.83 -2.0 438,422 - BT0362 0.83 +0.1 438,460 - BT0362 0.84 +0.1 438,460 - BT0362 0.84 -0.8 438,460 - BT0362 0.84 -2.3 438,467 + BT0362 0.85 -0.6 438,467 + BT0362 0.85 +0.5 438,468 - BT0362 0.85 -1.5 438,610 - BT0362 0.89 -0.9 438,696 - -0.8 438,958 + -0.4 438,999 + -2.1 439,065 - -1.1 439,115 + -0.3 439,155 + BT0363 0.11 -0.5 439,155 + BT0363 0.11 -1.8 439,308 + BT0363 0.20 -0.5 439,351 + BT0363 0.22 -0.5 439,397 - BT0363 0.25 +0.7 439,523 + BT0363 0.32 -1.1 439,549 + BT0363 0.33 -0.9 439,708 + BT0363 0.42 -2.2 439,800 + BT0363 0.47 -1.6 439,868 + BT0363 0.51 -1.9 440,005 + BT0363 0.59 -1.8 440,081 + BT0363 0.63 +1.1 440,082 - BT0363 0.63 -1.3 440,139 + BT0363 0.67 -2.3 440,139 + BT0363 0.67 -1.2 440,143 + BT0363 0.67 -2.2 440,144 - BT0363 0.67 -1.8 440,303 + BT0363 0.76 -1.5 440,366 + BT0363 0.79 -0.3 440,367 - BT0363 0.79 -1.8 440,482 + BT0363 0.86 -0.5 440,604 + -0.6 440,605 - -3.1 440,661 - -2.2 440,716 - -0.3 440,737 + +2.6 440,737 + -0.3 440,783 + -0.9 440,923 + -0.3 441,121 + BT0364 0.12 +1.1 441,159 + BT0364 0.13 -1.0 441,221 - BT0364 0.15 -0.5 441,315 + BT0364 0.18 -0.1 441,515 + BT0364 0.25 -0.8 441,515 + BT0364 0.25 +0.5 441,674 + BT0364 0.30 +1.1
Or see this region's nucleotide sequence