Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3431

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3430 and Rru_A3431 are separated by 13 nucleotidesRru_A3431 and Rru_A3432 are separated by 4 nucleotides Rru_A3430: Rru_A3430 - Acetyl-CoA carboxylase carboxyl transferase, beta subunit (NCBI), at 3,947,643 to 3,948,767 _A3430 Rru_A3431: Rru_A3431 - Folylpolyglutamate synthetase (NCBI), at 3,948,781 to 3,950,088 _A3431 Rru_A3432: Rru_A3432 - hypothetical protein (NCBI), at 3,950,093 to 3,951,616 _A3432 Position (kb) 3948 3949 3950 3951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3950.345 kb on + strand, within Rru_A3432at 3950.345 kb on + strand, within Rru_A3432at 3950.635 kb on + strand, within Rru_A3432at 3950.635 kb on + strand, within Rru_A3432at 3950.635 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.727 kb on + strand, within Rru_A3432at 3950.728 kb on - strand, within Rru_A3432

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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3,950,345 + Rru_A3432 0.17 +1.1
3,950,345 + Rru_A3432 0.17 +0.3
3,950,635 + Rru_A3432 0.36 +1.1
3,950,635 + Rru_A3432 0.36 +0.5
3,950,635 + Rru_A3432 0.36 -0.1
3,950,727 + Rru_A3432 0.42 +1.6
3,950,727 + Rru_A3432 0.42 -3.8
3,950,727 + Rru_A3432 0.42 +0.9
3,950,727 + Rru_A3432 0.42 +0.9
3,950,727 + Rru_A3432 0.42 +0.7
3,950,727 + Rru_A3432 0.42 +0.1
3,950,728 - Rru_A3432 0.42 +1.7

Or see this region's nucleotide sequence