Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3321

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3320 and Rru_A3321 are separated by 19 nucleotidesRru_A3321 and Rru_A3322 are separated by 166 nucleotides Rru_A3320: Rru_A3320 - Cytidyltransferase-related (NCBI), at 3,830,052 to 3,830,924 _A3320 Rru_A3321: Rru_A3321 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI), at 3,830,944 to 3,831,780 _A3321 Rru_A3322: Rru_A3322 - Transcriptional Regulator, Crp/Fnr family (NCBI), at 3,831,947 to 3,832,735 _A3322 Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3831.904 kb on + strandat 3831.904 kb on + strandat 3832.357 kb on + strand, within Rru_A3322at 3832.358 kb on - strand, within Rru_A3322at 3832.359 kb on + strand, within Rru_A3322at 3832.365 kb on + strand, within Rru_A3322at 3832.450 kb on - strand, within Rru_A3322at 3832.485 kb on + strand, within Rru_A3322at 3832.485 kb on + strand, within Rru_A3322at 3832.485 kb on + strand, within Rru_A3322at 3832.485 kb on + strand, within Rru_A3322at 3832.485 kb on + strand, within Rru_A3322at 3832.485 kb on + strand, within Rru_A3322at 3832.486 kb on - strand, within Rru_A3322

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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3,831,904 + -2.1
3,831,904 + +0.0
3,832,357 + Rru_A3322 0.52 +2.0
3,832,358 - Rru_A3322 0.52 -3.5
3,832,359 + Rru_A3322 0.52 +1.6
3,832,365 + Rru_A3322 0.53 -2.9
3,832,450 - Rru_A3322 0.64 -3.0
3,832,485 + Rru_A3322 0.68 -1.2
3,832,485 + Rru_A3322 0.68 +0.5
3,832,485 + Rru_A3322 0.68 -3.6
3,832,485 + Rru_A3322 0.68 -1.5
3,832,485 + Rru_A3322 0.68 -0.4
3,832,485 + Rru_A3322 0.68 -1.2
3,832,486 - Rru_A3322 0.68 -2.1

Or see this region's nucleotide sequence