Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2436 and Rru_A2437 are separated by 28 nucleotides Rru_A2437 and Rru_A2438 are separated by 8 nucleotides Rru_A2438 and Rru_A2439 are separated by 1 nucleotides Rru_A2439 and Rru_A2440 are separated by 39 nucleotides
Rru_A2436: Rru_A2436 - Leucyltransferase (NCBI), at 2,834,821 to 2,835,462
_A2436
Rru_A2437: Rru_A2437 - cellulase-like protein (NCBI), at 2,835,491 to 2,835,982
_A2437
Rru_A2438: Rru_A2438 - Mammalian cell entry related (NCBI), at 2,835,991 to 2,836,446
_A2438
Rru_A2439: Rru_A2439 - Mammalian cell entry related (NCBI), at 2,836,448 to 2,837,263
_A2439
Rru_A2440: Rru_A2440 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI), at 2,837,303 to 2,837,659
_A2440
Position (kb)
2835
2836
2837 Strain fitness (log2 ratio)
-2
-1
0
1 at 2835.015 kb on + strand, within Rru_A2436 at 2835.135 kb on + strand, within Rru_A2436 at 2835.493 kb on - strand at 2835.986 kb on - strand at 2835.986 kb on - strand at 2835.986 kb on - strand at 2836.526 kb on - strand at 2836.538 kb on - strand, within Rru_A2439 at 2836.538 kb on - strand, within Rru_A2439 at 2836.538 kb on - strand, within Rru_A2439 at 2836.550 kb on - strand, within Rru_A2439 at 2836.562 kb on - strand, within Rru_A2439 at 2837.323 kb on - strand at 2837.380 kb on - strand, within Rru_A2440 at 2837.380 kb on - strand, within Rru_A2440
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 2,835,015 + Rru_A2436 0.30 +1.0 2,835,135 + Rru_A2436 0.49 -0.8 2,835,493 - +0.6 2,835,986 - -1.6 2,835,986 - -0.3 2,835,986 - -2.7 2,836,526 - -1.7 2,836,538 - Rru_A2439 0.11 -0.6 2,836,538 - Rru_A2439 0.11 -1.2 2,836,538 - Rru_A2439 0.11 +0.6 2,836,550 - Rru_A2439 0.12 -0.6 2,836,562 - Rru_A2439 0.14 -2.5 2,837,323 - -2.7 2,837,380 - Rru_A2440 0.22 -0.7 2,837,380 - Rru_A2440 0.22 +0.7
Or see this region's nucleotide sequence