Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2269

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2267 and Rru_A2268 are separated by 197 nucleotidesRru_A2268 and Rru_A2269 are separated by 23 nucleotidesRru_A2269 and Rru_A2270 are separated by 26 nucleotidesRru_A2270 and Rru_A2271 are separated by 48 nucleotides Rru_A2267: Rru_A2267 - Electron transfer flavoprotein beta-subunit (NCBI), at 2,627,664 to 2,628,515 _A2267 Rru_A2268: Rru_A2268 - Nitrogen fixation protein NifW (NCBI), at 2,628,713 to 2,629,075 _A2268 Rru_A2269: Rru_A2269 - Pyruvate carboxyltransferase (NCBI), at 2,629,099 to 2,630,277 _A2269 Rru_A2270: Rru_A2270 - Nitrogen-fixing NifU-like (NCBI), at 2,630,304 to 2,630,603 _A2270 Rru_A2271: Rru_A2271 - HesB/YadR/YfhF (NCBI), at 2,630,652 to 2,630,984 _A2271 Position (kb) 2629 2630 2631Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2628.220 kb on + strand, within Rru_A2267at 2628.220 kb on + strand, within Rru_A2267at 2628.220 kb on + strand, within Rru_A2267at 2628.220 kb on + strand, within Rru_A2267at 2628.221 kb on - strand, within Rru_A2267at 2628.221 kb on - strand, within Rru_A2267at 2628.221 kb on - strand, within Rru_A2267at 2628.221 kb on - strand, within Rru_A2267at 2628.406 kb on + strand, within Rru_A2267at 2628.407 kb on - strand, within Rru_A2267at 2628.509 kb on + strandat 2628.510 kb on - strandat 2628.510 kb on - strandat 2628.510 kb on - strandat 2628.600 kb on + strandat 2628.601 kb on - strandat 2628.641 kb on - strandat 2628.641 kb on - strandat 2628.641 kb on - strandat 2628.642 kb on + strandat 2628.643 kb on - strandat 2628.677 kb on - strandat 2628.677 kb on - strandat 2628.715 kb on - strandat 2628.868 kb on - strand, within Rru_A2268at 2628.868 kb on - strand, within Rru_A2268at 2628.955 kb on - strand, within Rru_A2268at 2629.533 kb on + strand, within Rru_A2269at 2629.544 kb on + strand, within Rru_A2269at 2629.544 kb on + strand, within Rru_A2269at 2629.544 kb on + strand, within Rru_A2269at 2629.544 kb on + strand, within Rru_A2269at 2629.545 kb on - strand, within Rru_A2269at 2629.545 kb on - strand, within Rru_A2269at 2629.776 kb on + strand, within Rru_A2269at 2630.004 kb on + strand, within Rru_A2269at 2630.043 kb on + strand, within Rru_A2269at 2630.043 kb on + strand, within Rru_A2269at 2630.044 kb on - strand, within Rru_A2269at 2630.248 kb on - strandat 2630.248 kb on - strandat 2630.248 kb on - strandat 2630.945 kb on + strand, within Rru_A2271at 2630.945 kb on + strand, within Rru_A2271at 2630.945 kb on + strand, within Rru_A2271at 2630.946 kb on - strand, within Rru_A2271at 2631.068 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
2,628,220 + Rru_A2267 0.65 -0.8
2,628,220 + Rru_A2267 0.65 +0.7
2,628,220 + Rru_A2267 0.65 +0.2
2,628,220 + Rru_A2267 0.65 -2.5
2,628,221 - Rru_A2267 0.65 -4.3
2,628,221 - Rru_A2267 0.65 -0.3
2,628,221 - Rru_A2267 0.65 +0.5
2,628,221 - Rru_A2267 0.65 -1.6
2,628,406 + Rru_A2267 0.87 +0.4
2,628,407 - Rru_A2267 0.87 -1.7
2,628,509 + -0.1
2,628,510 - -0.5
2,628,510 - +0.1
2,628,510 - -3.5
2,628,600 + +0.5
2,628,601 - +0.1
2,628,641 - -0.4
2,628,641 - -0.9
2,628,641 - +0.4
2,628,642 + -0.0
2,628,643 - -1.2
2,628,677 - +0.7
2,628,677 - +0.0
2,628,715 - -0.2
2,628,868 - Rru_A2268 0.43 -1.1
2,628,868 - Rru_A2268 0.43 +1.3
2,628,955 - Rru_A2268 0.67 +0.6
2,629,533 + Rru_A2269 0.37 -0.8
2,629,544 + Rru_A2269 0.38 +1.0
2,629,544 + Rru_A2269 0.38 +0.8
2,629,544 + Rru_A2269 0.38 -3.6
2,629,544 + Rru_A2269 0.38 -2.4
2,629,545 - Rru_A2269 0.38 +0.2
2,629,545 - Rru_A2269 0.38 -1.0
2,629,776 + Rru_A2269 0.57 -3.8
2,630,004 + Rru_A2269 0.77 -1.8
2,630,043 + Rru_A2269 0.80 -2.8
2,630,043 + Rru_A2269 0.80 -2.9
2,630,044 - Rru_A2269 0.80 -0.0
2,630,248 - +0.2
2,630,248 - -3.1
2,630,248 - +0.4
2,630,945 + Rru_A2271 0.88 +1.0
2,630,945 + Rru_A2271 0.88 +0.0
2,630,945 + Rru_A2271 0.88 -1.7
2,630,946 - Rru_A2271 0.88 +0.1
2,631,068 - -0.1

Or see this region's nucleotide sequence