Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2267 and Rru_A2268 are separated by 197 nucleotides Rru_A2268 and Rru_A2269 are separated by 23 nucleotides Rru_A2269 and Rru_A2270 are separated by 26 nucleotides Rru_A2270 and Rru_A2271 are separated by 48 nucleotides
Rru_A2267: Rru_A2267 - Electron transfer flavoprotein beta-subunit (NCBI), at 2,627,664 to 2,628,515
_A2267
Rru_A2268: Rru_A2268 - Nitrogen fixation protein NifW (NCBI), at 2,628,713 to 2,629,075
_A2268
Rru_A2269: Rru_A2269 - Pyruvate carboxyltransferase (NCBI), at 2,629,099 to 2,630,277
_A2269
Rru_A2270: Rru_A2270 - Nitrogen-fixing NifU-like (NCBI), at 2,630,304 to 2,630,603
_A2270
Rru_A2271: Rru_A2271 - HesB/YadR/YfhF (NCBI), at 2,630,652 to 2,630,984
_A2271
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2628.220 kb on + strand, within Rru_A2267 at 2628.220 kb on + strand, within Rru_A2267 at 2628.220 kb on + strand, within Rru_A2267 at 2628.220 kb on + strand, within Rru_A2267 at 2628.221 kb on - strand, within Rru_A2267 at 2628.221 kb on - strand, within Rru_A2267 at 2628.221 kb on - strand, within Rru_A2267 at 2628.221 kb on - strand, within Rru_A2267 at 2628.406 kb on + strand, within Rru_A2267 at 2628.407 kb on - strand, within Rru_A2267 at 2628.509 kb on + strand at 2628.510 kb on - strand at 2628.510 kb on - strand at 2628.510 kb on - strand at 2628.600 kb on + strand at 2628.601 kb on - strand at 2628.641 kb on - strand at 2628.641 kb on - strand at 2628.641 kb on - strand at 2628.642 kb on + strand at 2628.643 kb on - strand at 2628.677 kb on - strand at 2628.677 kb on - strand at 2628.715 kb on - strand at 2628.868 kb on - strand, within Rru_A2268 at 2628.868 kb on - strand, within Rru_A2268 at 2628.955 kb on - strand, within Rru_A2268 at 2629.533 kb on + strand, within Rru_A2269 at 2629.544 kb on + strand, within Rru_A2269 at 2629.544 kb on + strand, within Rru_A2269 at 2629.544 kb on + strand, within Rru_A2269 at 2629.544 kb on + strand, within Rru_A2269 at 2629.545 kb on - strand, within Rru_A2269 at 2629.545 kb on - strand, within Rru_A2269 at 2629.776 kb on + strand, within Rru_A2269 at 2630.004 kb on + strand, within Rru_A2269 at 2630.043 kb on + strand, within Rru_A2269 at 2630.043 kb on + strand, within Rru_A2269 at 2630.044 kb on - strand, within Rru_A2269 at 2630.248 kb on - strand at 2630.248 kb on - strand at 2630.248 kb on - strand at 2630.945 kb on + strand, within Rru_A2271 at 2630.945 kb on + strand, within Rru_A2271 at 2630.945 kb on + strand, within Rru_A2271 at 2630.946 kb on - strand, within Rru_A2271 at 2631.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 2,628,220 + Rru_A2267 0.65 -0.8 2,628,220 + Rru_A2267 0.65 +0.7 2,628,220 + Rru_A2267 0.65 +0.2 2,628,220 + Rru_A2267 0.65 -2.5 2,628,221 - Rru_A2267 0.65 -4.3 2,628,221 - Rru_A2267 0.65 -0.3 2,628,221 - Rru_A2267 0.65 +0.5 2,628,221 - Rru_A2267 0.65 -1.6 2,628,406 + Rru_A2267 0.87 +0.4 2,628,407 - Rru_A2267 0.87 -1.7 2,628,509 + -0.1 2,628,510 - -0.5 2,628,510 - +0.1 2,628,510 - -3.5 2,628,600 + +0.5 2,628,601 - +0.1 2,628,641 - -0.4 2,628,641 - -0.9 2,628,641 - +0.4 2,628,642 + -0.0 2,628,643 - -1.2 2,628,677 - +0.7 2,628,677 - +0.0 2,628,715 - -0.2 2,628,868 - Rru_A2268 0.43 -1.1 2,628,868 - Rru_A2268 0.43 +1.3 2,628,955 - Rru_A2268 0.67 +0.6 2,629,533 + Rru_A2269 0.37 -0.8 2,629,544 + Rru_A2269 0.38 +1.0 2,629,544 + Rru_A2269 0.38 +0.8 2,629,544 + Rru_A2269 0.38 -3.6 2,629,544 + Rru_A2269 0.38 -2.4 2,629,545 - Rru_A2269 0.38 +0.2 2,629,545 - Rru_A2269 0.38 -1.0 2,629,776 + Rru_A2269 0.57 -3.8 2,630,004 + Rru_A2269 0.77 -1.8 2,630,043 + Rru_A2269 0.80 -2.8 2,630,043 + Rru_A2269 0.80 -2.9 2,630,044 - Rru_A2269 0.80 -0.0 2,630,248 - +0.2 2,630,248 - -3.1 2,630,248 - +0.4 2,630,945 + Rru_A2271 0.88 +1.0 2,630,945 + Rru_A2271 0.88 +0.0 2,630,945 + Rru_A2271 0.88 -1.7 2,630,946 - Rru_A2271 0.88 +0.1 2,631,068 - -0.1
Or see this region's nucleotide sequence