Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2165

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2164 and Rru_A2165 overlap by 4 nucleotidesRru_A2165 and Rru_A2166 are separated by 13 nucleotides Rru_A2164: Rru_A2164 - Protein of unknown function UPF0118 (NCBI), at 2,513,048 to 2,514,157 _A2164 Rru_A2165: Rru_A2165 - CDP-alcohol phosphatidyltransferase (NCBI), at 2,514,154 to 2,514,777 _A2165 Rru_A2166: Rru_A2166 - hypothetical protein (NCBI), at 2,514,791 to 2,516,128 _A2166 Position (kb) 2514 2515Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2513.296 kb on - strand, within Rru_A2164at 2513.296 kb on - strand, within Rru_A2164at 2513.418 kb on + strand, within Rru_A2164at 2513.418 kb on + strand, within Rru_A2164at 2513.419 kb on - strand, within Rru_A2164at 2513.500 kb on - strand, within Rru_A2164at 2513.599 kb on - strand, within Rru_A2164at 2513.599 kb on - strand, within Rru_A2164at 2513.656 kb on + strand, within Rru_A2164at 2513.657 kb on - strand, within Rru_A2164at 2513.657 kb on - strand, within Rru_A2164at 2513.657 kb on - strand, within Rru_A2164at 2513.658 kb on + strand, within Rru_A2164at 2513.659 kb on - strand, within Rru_A2164at 2513.659 kb on - strand, within Rru_A2164at 2513.659 kb on - strand, within Rru_A2164at 2513.833 kb on + strand, within Rru_A2164at 2513.833 kb on + strand, within Rru_A2164at 2513.885 kb on - strand, within Rru_A2164at 2513.885 kb on - strand, within Rru_A2164at 2514.043 kb on - strand, within Rru_A2164at 2514.379 kb on - strand, within Rru_A2165at 2515.312 kb on - strand, within Rru_A2166at 2515.312 kb on - strand, within Rru_A2166at 2515.312 kb on - strand, within Rru_A2166at 2515.341 kb on + strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.342 kb on - strand, within Rru_A2166at 2515.690 kb on + strand, within Rru_A2166at 2515.691 kb on - strand, within Rru_A2166at 2515.691 kb on - strand, within Rru_A2166

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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2,513,296 - Rru_A2164 0.22 -1.0
2,513,296 - Rru_A2164 0.22 -3.2
2,513,418 + Rru_A2164 0.33 -2.5
2,513,418 + Rru_A2164 0.33 +0.7
2,513,419 - Rru_A2164 0.33 +0.8
2,513,500 - Rru_A2164 0.41 +0.7
2,513,599 - Rru_A2164 0.50 +0.8
2,513,599 - Rru_A2164 0.50 -1.2
2,513,656 + Rru_A2164 0.55 +2.2
2,513,657 - Rru_A2164 0.55 -2.8
2,513,657 - Rru_A2164 0.55 -0.5
2,513,657 - Rru_A2164 0.55 +1.6
2,513,658 + Rru_A2164 0.55 -1.5
2,513,659 - Rru_A2164 0.55 -2.5
2,513,659 - Rru_A2164 0.55 -2.5
2,513,659 - Rru_A2164 0.55 -2.5
2,513,833 + Rru_A2164 0.71 +0.1
2,513,833 + Rru_A2164 0.71 -1.1
2,513,885 - Rru_A2164 0.75 -3.7
2,513,885 - Rru_A2164 0.75 -2.2
2,514,043 - Rru_A2164 0.90 -3.4
2,514,379 - Rru_A2165 0.36 +1.1
2,515,312 - Rru_A2166 0.39 -1.8
2,515,312 - Rru_A2166 0.39 -3.7
2,515,312 - Rru_A2166 0.39 -1.4
2,515,341 + Rru_A2166 0.41 -2.7
2,515,342 - Rru_A2166 0.41 -4.9
2,515,342 - Rru_A2166 0.41 -0.5
2,515,342 - Rru_A2166 0.41 -1.0
2,515,342 - Rru_A2166 0.41 -0.4
2,515,342 - Rru_A2166 0.41 -0.9
2,515,690 + Rru_A2166 0.67 +1.7
2,515,691 - Rru_A2166 0.67 +1.7
2,515,691 - Rru_A2166 0.67 +1.7

Or see this region's nucleotide sequence