Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2164 and Rru_A2165 overlap by 4 nucleotides Rru_A2165 and Rru_A2166 are separated by 13 nucleotides
Rru_A2164: Rru_A2164 - Protein of unknown function UPF0118 (NCBI), at 2,513,048 to 2,514,157
_A2164
Rru_A2165: Rru_A2165 - CDP-alcohol phosphatidyltransferase (NCBI), at 2,514,154 to 2,514,777
_A2165
Rru_A2166: Rru_A2166 - hypothetical protein (NCBI), at 2,514,791 to 2,516,128
_A2166
Position (kb)
2514
2515 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2513.296 kb on - strand, within Rru_A2164 at 2513.296 kb on - strand, within Rru_A2164 at 2513.418 kb on + strand, within Rru_A2164 at 2513.418 kb on + strand, within Rru_A2164 at 2513.419 kb on - strand, within Rru_A2164 at 2513.500 kb on - strand, within Rru_A2164 at 2513.599 kb on - strand, within Rru_A2164 at 2513.599 kb on - strand, within Rru_A2164 at 2513.656 kb on + strand, within Rru_A2164 at 2513.657 kb on - strand, within Rru_A2164 at 2513.657 kb on - strand, within Rru_A2164 at 2513.657 kb on - strand, within Rru_A2164 at 2513.658 kb on + strand, within Rru_A2164 at 2513.659 kb on - strand, within Rru_A2164 at 2513.659 kb on - strand, within Rru_A2164 at 2513.659 kb on - strand, within Rru_A2164 at 2513.833 kb on + strand, within Rru_A2164 at 2513.833 kb on + strand, within Rru_A2164 at 2513.885 kb on - strand, within Rru_A2164 at 2513.885 kb on - strand, within Rru_A2164 at 2514.043 kb on - strand, within Rru_A2164 at 2514.379 kb on - strand, within Rru_A2165 at 2515.312 kb on - strand, within Rru_A2166 at 2515.312 kb on - strand, within Rru_A2166 at 2515.312 kb on - strand, within Rru_A2166 at 2515.341 kb on + strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.690 kb on + strand, within Rru_A2166 at 2515.691 kb on - strand, within Rru_A2166 at 2515.691 kb on - strand, within Rru_A2166
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 2,513,296 - Rru_A2164 0.22 -1.0 2,513,296 - Rru_A2164 0.22 -3.2 2,513,418 + Rru_A2164 0.33 -2.5 2,513,418 + Rru_A2164 0.33 +0.7 2,513,419 - Rru_A2164 0.33 +0.8 2,513,500 - Rru_A2164 0.41 +0.7 2,513,599 - Rru_A2164 0.50 +0.8 2,513,599 - Rru_A2164 0.50 -1.2 2,513,656 + Rru_A2164 0.55 +2.2 2,513,657 - Rru_A2164 0.55 -2.8 2,513,657 - Rru_A2164 0.55 -0.5 2,513,657 - Rru_A2164 0.55 +1.6 2,513,658 + Rru_A2164 0.55 -1.5 2,513,659 - Rru_A2164 0.55 -2.5 2,513,659 - Rru_A2164 0.55 -2.5 2,513,659 - Rru_A2164 0.55 -2.5 2,513,833 + Rru_A2164 0.71 +0.1 2,513,833 + Rru_A2164 0.71 -1.1 2,513,885 - Rru_A2164 0.75 -3.7 2,513,885 - Rru_A2164 0.75 -2.2 2,514,043 - Rru_A2164 0.90 -3.4 2,514,379 - Rru_A2165 0.36 +1.1 2,515,312 - Rru_A2166 0.39 -1.8 2,515,312 - Rru_A2166 0.39 -3.7 2,515,312 - Rru_A2166 0.39 -1.4 2,515,341 + Rru_A2166 0.41 -2.7 2,515,342 - Rru_A2166 0.41 -4.9 2,515,342 - Rru_A2166 0.41 -0.5 2,515,342 - Rru_A2166 0.41 -1.0 2,515,342 - Rru_A2166 0.41 -0.4 2,515,342 - Rru_A2166 0.41 -0.9 2,515,690 + Rru_A2166 0.67 +1.7 2,515,691 - Rru_A2166 0.67 +1.7 2,515,691 - Rru_A2166 0.67 +1.7
Or see this region's nucleotide sequence