Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1577

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1576 and Rru_A1577 are separated by 101 nucleotidesRru_A1577 and Rru_A1578 overlap by 4 nucleotides Rru_A1576: Rru_A1576 - Prolyl-tRNA synthetase (NCBI), at 1,856,768 to 1,858,075 _A1576 Rru_A1577: Rru_A1577 - ThiJ/PfpI (NCBI), at 1,858,177 to 1,858,806 _A1577 Rru_A1578: Rru_A1578 - Lipoprotein releasing system, transmembrane protein, LolC/E family (NCBI), at 1,858,803 to 1,860,056 _A1578 Position (kb) 1858 1859Strain fitness (log2 ratio) -1 0 1at 1858.196 kb on + strandat 1858.198 kb on + strandat 1858.198 kb on + strandat 1858.198 kb on + strandat 1858.198 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
1,858,196 + -0.1
1,858,198 + +0.0
1,858,198 + -1.3
1,858,198 + -1.3
1,858,198 + -1.6

Or see this region's nucleotide sequence