Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0838 and Rru_A0839 are separated by 161 nucleotides Rru_A0839 and Rru_A0840 are separated by 249 nucleotides
Rru_A0838: Rru_A0838 - TonB-dependent receptor (NCBI), at 996,371 to 998,386
_A0838
Rru_A0839: Rru_A0839 - Transcriptional Regulator, AraC family (NCBI), at 998,548 to 999,531
_A0839
Rru_A0840: Rru_A0840 - Major facilitator superfamily MFS_1 (NCBI), at 999,781 to 1,001,100
_A0840
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 997.608 kb on + strand, within Rru_A0838 at 997.608 kb on + strand, within Rru_A0838 at 997.609 kb on - strand, within Rru_A0838 at 997.612 kb on - strand, within Rru_A0838 at 997.683 kb on + strand, within Rru_A0838 at 997.684 kb on - strand, within Rru_A0838 at 997.684 kb on - strand, within Rru_A0838 at 997.688 kb on + strand, within Rru_A0838 at 997.688 kb on + strand, within Rru_A0838 at 997.688 kb on + strand, within Rru_A0838 at 997.688 kb on + strand, within Rru_A0838 at 997.688 kb on + strand, within Rru_A0838 at 997.689 kb on - strand, within Rru_A0838 at 997.689 kb on - strand, within Rru_A0838 at 997.689 kb on - strand, within Rru_A0838 at 998.005 kb on - strand, within Rru_A0838 at 998.005 kb on - strand, within Rru_A0838 at 998.008 kb on + strand, within Rru_A0838 at 998.059 kb on - strand, within Rru_A0838 at 998.101 kb on - strand, within Rru_A0838 at 998.264 kb on + strand at 998.265 kb on - strand at 998.265 kb on - strand at 998.265 kb on - strand at 998.353 kb on + strand at 998.353 kb on + strand at 998.354 kb on - strand at 998.354 kb on - strand at 998.895 kb on - strand, within Rru_A0839 at 999.124 kb on + strand, within Rru_A0839 at 999.124 kb on + strand, within Rru_A0839 at 999.124 kb on + strand, within Rru_A0839 at 999.124 kb on + strand, within Rru_A0839 at 999.125 kb on - strand, within Rru_A0839 at 999.125 kb on - strand, within Rru_A0839 at 999.125 kb on - strand, within Rru_A0839 at 999.164 kb on + strand, within Rru_A0839 at 999.354 kb on + strand, within Rru_A0839 at 999.354 kb on + strand, within Rru_A0839 at 999.355 kb on - strand, within Rru_A0839 at 999.355 kb on - strand, within Rru_A0839 at 999.355 kb on - strand, within Rru_A0839 at 999.355 kb on - strand, within Rru_A0839 at 999.430 kb on + strand, within Rru_A0839 at 999.431 kb on - strand, within Rru_A0839 at 999.692 kb on - strand at 999.719 kb on + strand at 999.720 kb on - strand at 999.751 kb on + strand at 999.871 kb on + strand at 999.871 kb on + strand at 999.872 kb on - strand at 999.872 kb on - strand at 999.872 kb on - strand at 999.872 kb on - strand at 1000.291 kb on + strand, within Rru_A0840 at 1000.291 kb on + strand, within Rru_A0840 at 1000.292 kb on - strand, within Rru_A0840 at 1000.293 kb on + strand, within Rru_A0840 at 1000.304 kb on + strand, within Rru_A0840 at 1000.304 kb on + strand, within Rru_A0840 at 1000.305 kb on - strand, within Rru_A0840 at 1000.305 kb on - strand, within Rru_A0840 at 1000.305 kb on - strand, within Rru_A0840 at 1000.305 kb on - strand, within Rru_A0840
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 997,608 + Rru_A0838 0.61 -0.0 997,608 + Rru_A0838 0.61 -0.7 997,609 - Rru_A0838 0.61 -0.5 997,612 - Rru_A0838 0.62 +2.1 997,683 + Rru_A0838 0.65 -2.6 997,684 - Rru_A0838 0.65 +0.2 997,684 - Rru_A0838 0.65 +0.5 997,688 + Rru_A0838 0.65 +0.2 997,688 + Rru_A0838 0.65 +0.8 997,688 + Rru_A0838 0.65 -1.2 997,688 + Rru_A0838 0.65 -0.7 997,688 + Rru_A0838 0.65 +0.8 997,689 - Rru_A0838 0.65 -1.5 997,689 - Rru_A0838 0.65 -4.5 997,689 - Rru_A0838 0.65 +0.7 998,005 - Rru_A0838 0.81 -3.9 998,005 - Rru_A0838 0.81 +0.4 998,008 + Rru_A0838 0.81 +1.8 998,059 - Rru_A0838 0.84 +1.3 998,101 - Rru_A0838 0.86 +0.2 998,264 + -0.1 998,265 - -0.3 998,265 - +1.2 998,265 - +0.3 998,353 + +1.5 998,353 + -4.4 998,354 - -0.5 998,354 - +1.3 998,895 - Rru_A0839 0.35 -3.9 999,124 + Rru_A0839 0.59 +1.2 999,124 + Rru_A0839 0.59 +0.1 999,124 + Rru_A0839 0.59 -0.5 999,124 + Rru_A0839 0.59 +1.0 999,125 - Rru_A0839 0.59 -0.6 999,125 - Rru_A0839 0.59 -2.6 999,125 - Rru_A0839 0.59 -2.0 999,164 + Rru_A0839 0.63 -2.1 999,354 + Rru_A0839 0.82 -0.0 999,354 + Rru_A0839 0.82 -3.0 999,355 - Rru_A0839 0.82 -0.9 999,355 - Rru_A0839 0.82 +0.2 999,355 - Rru_A0839 0.82 +0.7 999,355 - Rru_A0839 0.82 -2.3 999,430 + Rru_A0839 0.90 -0.6 999,431 - Rru_A0839 0.90 -3.5 999,692 - +0.7 999,719 + +1.4 999,720 - -2.4 999,751 + -0.8 999,871 + -1.1 999,871 + -0.4 999,872 - -0.1 999,872 - -3.9 999,872 - -0.8 999,872 - -3.3 1,000,291 + Rru_A0840 0.39 +0.8 1,000,291 + Rru_A0840 0.39 +0.7 1,000,292 - Rru_A0840 0.39 -0.4 1,000,293 + Rru_A0840 0.39 +0.5 1,000,304 + Rru_A0840 0.40 -1.2 1,000,304 + Rru_A0840 0.40 -0.0 1,000,305 - Rru_A0840 0.40 -2.7 1,000,305 - Rru_A0840 0.40 +0.8 1,000,305 - Rru_A0840 0.40 -0.7 1,000,305 - Rru_A0840 0.40 +1.3
Or see this region's nucleotide sequence