Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0817 and Rru_A0818 overlap by 23 nucleotides Rru_A0818 and Rru_A0819 are separated by 662 nucleotides
Rru_A0817: Rru_A0817 - Transposase, mutator type (NCBI), at 973,250 to 973,960
_A0817
Rru_A0818: Rru_A0818 - hypothetical protein (NCBI), at 973,938 to 974,273
_A0818
Rru_A0819: Rru_A0819 - Asparagine synthase (NCBI), at 974,936 to 976,897
_A0819
Position (kb) 973
974
975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 973.158 kb on - strand at 973.250 kb on - strand at 973.257 kb on - strand at 973.257 kb on - strand at 973.493 kb on + strand, within Rru_A0817 at 973.493 kb on + strand, within Rru_A0817 at 973.494 kb on - strand, within Rru_A0817 at 973.711 kb on - strand, within Rru_A0817 at 973.958 kb on + strand at 973.959 kb on - strand at 973.959 kb on - strand at 974.155 kb on + strand, within Rru_A0818 at 974.155 kb on + strand, within Rru_A0818 at 974.155 kb on + strand, within Rru_A0818 at 974.156 kb on - strand, within Rru_A0818 at 974.156 kb on - strand, within Rru_A0818 at 974.156 kb on - strand, within Rru_A0818 at 974.156 kb on - strand, within Rru_A0818 at 974.528 kb on + strand at 974.529 kb on - strand at 974.529 kb on - strand at 974.529 kb on - strand at 974.529 kb on - strand at 974.529 kb on - strand at 974.529 kb on - strand at 974.529 kb on - strand at 974.533 kb on - strand at 974.533 kb on - strand at 974.659 kb on + strand at 974.659 kb on + strand at 974.659 kb on + strand at 974.660 kb on - strand at 974.674 kb on - strand at 974.714 kb on + strand at 974.714 kb on + strand at 974.714 kb on + strand at 974.714 kb on + strand at 974.715 kb on - strand at 974.878 kb on + strand at 974.878 kb on + strand at 974.879 kb on - strand at 974.879 kb on - strand at 974.879 kb on - strand at 974.980 kb on + strand at 974.980 kb on + strand at 974.980 kb on + strand at 974.981 kb on - strand at 974.981 kb on - strand at 974.981 kb on - strand at 975.023 kb on + strand at 975.024 kb on - strand at 975.148 kb on + strand, within Rru_A0819 at 975.149 kb on - strand, within Rru_A0819 at 975.149 kb on - strand, within Rru_A0819 at 975.264 kb on - strand, within Rru_A0819
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 973,158 - +1.9 973,250 - -0.1 973,257 - +0.2 973,257 - +0.4 973,493 + Rru_A0817 0.34 +0.3 973,493 + Rru_A0817 0.34 +0.7 973,494 - Rru_A0817 0.34 -0.5 973,711 - Rru_A0817 0.65 +1.9 973,958 + -3.7 973,959 - -2.2 973,959 - -0.8 974,155 + Rru_A0818 0.65 +1.4 974,155 + Rru_A0818 0.65 -0.5 974,155 + Rru_A0818 0.65 -0.9 974,156 - Rru_A0818 0.65 +1.2 974,156 - Rru_A0818 0.65 +0.1 974,156 - Rru_A0818 0.65 +0.3 974,156 - Rru_A0818 0.65 +0.2 974,528 + +1.1 974,529 - +1.8 974,529 - -2.2 974,529 - -0.4 974,529 - -3.9 974,529 - -2.9 974,529 - -0.9 974,529 - -2.1 974,533 - -0.1 974,533 - +0.1 974,659 + -0.1 974,659 + -2.4 974,659 + -0.3 974,660 - +2.1 974,674 - -2.3 974,714 + -0.0 974,714 + -1.6 974,714 + +3.0 974,714 + -0.1 974,715 - +0.5 974,878 + -1.8 974,878 + +2.2 974,879 - -1.0 974,879 - -3.3 974,879 - -0.0 974,980 + +1.3 974,980 + +0.7 974,980 + +1.1 974,981 - -1.5 974,981 - -0.5 974,981 - +0.5 975,023 + -0.9 975,024 - -2.7 975,148 + Rru_A0819 0.11 +1.6 975,149 - Rru_A0819 0.11 +0.8 975,149 - Rru_A0819 0.11 +0.5 975,264 - Rru_A0819 0.17 -3.3
Or see this region's nucleotide sequence