Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0813

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0812 and Rru_A0813 are separated by 24 nucleotidesRru_A0813 and Rru_A0814 are separated by 225 nucleotidesRru_A0814 and Rru_A0815 overlap by 4 nucleotides Rru_A0812: Rru_A0812 - no description, at 967,695 to 968,819 _A0812 Rru_A0813: Rru_A0813 - no description, at 968,844 to 969,686 _A0813 Rru_A0814: Rru_A0814 - hypothetical protein (NCBI), at 969,912 to 970,436 _A0814 Rru_A0815: Rru_A0815 - hypothetical protein (NCBI), at 970,433 to 970,804 _A0815 Position (kb) 968 969 970Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 967.857 kb on - strand, within Rru_A0812at 967.932 kb on + strand, within Rru_A0812at 968.057 kb on - strand, within Rru_A0812at 968.059 kb on + strand, within Rru_A0812at 968.059 kb on + strand, within Rru_A0812at 968.221 kb on + strand, within Rru_A0812at 968.222 kb on - strand, within Rru_A0812at 968.222 kb on - strand, within Rru_A0812at 968.222 kb on - strand, within Rru_A0812at 968.451 kb on + strand, within Rru_A0812at 968.599 kb on + strand, within Rru_A0812at 968.846 kb on - strandat 968.902 kb on + strandat 968.903 kb on - strandat 969.061 kb on + strand, within Rru_A0813at 969.061 kb on + strand, within Rru_A0813at 969.061 kb on + strand, within Rru_A0813at 969.062 kb on - strand, within Rru_A0813at 969.274 kb on + strand, within Rru_A0813at 969.275 kb on - strand, within Rru_A0813at 969.275 kb on - strand, within Rru_A0813at 969.367 kb on + strand, within Rru_A0813at 969.367 kb on + strand, within Rru_A0813at 969.368 kb on - strand, within Rru_A0813at 969.455 kb on + strand, within Rru_A0813at 969.455 kb on + strand, within Rru_A0813at 969.455 kb on + strand, within Rru_A0813at 969.487 kb on + strand, within Rru_A0813at 969.488 kb on - strand, within Rru_A0813at 969.488 kb on - strand, within Rru_A0813at 969.496 kb on + strand, within Rru_A0813at 969.496 kb on + strand, within Rru_A0813at 969.496 kb on + strand, within Rru_A0813at 969.497 kb on - strand, within Rru_A0813at 969.497 kb on - strand, within Rru_A0813at 969.517 kb on + strand, within Rru_A0813at 969.518 kb on - strand, within Rru_A0813at 969.533 kb on - strand, within Rru_A0813at 969.879 kb on - strandat 969.933 kb on + strandat 969.933 kb on + strandat 969.934 kb on - strandat 969.941 kb on + strandat 969.991 kb on + strand, within Rru_A0814at 970.076 kb on + strand, within Rru_A0814at 970.076 kb on + strand, within Rru_A0814at 970.077 kb on - strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.191 kb on + strand, within Rru_A0814at 970.218 kb on - strand, within Rru_A0814at 970.258 kb on + strand, within Rru_A0814at 970.259 kb on - strand, within Rru_A0814at 970.276 kb on - strand, within Rru_A0814at 970.276 kb on - strand, within Rru_A0814at 970.294 kb on + strand, within Rru_A0814at 970.295 kb on - strand, within Rru_A0814at 970.372 kb on + strand, within Rru_A0814at 970.373 kb on - strand, within Rru_A0814at 970.393 kb on + strandat 970.393 kb on + strandat 970.393 kb on + strandat 970.394 kb on - strandat 970.394 kb on - strandat 970.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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967,857 - Rru_A0812 0.14 +2.1
967,932 + Rru_A0812 0.21 -1.5
968,057 - Rru_A0812 0.32 -2.6
968,059 + Rru_A0812 0.32 +0.6
968,059 + Rru_A0812 0.32 -2.9
968,221 + Rru_A0812 0.47 -0.9
968,222 - Rru_A0812 0.47 +0.7
968,222 - Rru_A0812 0.47 +1.2
968,222 - Rru_A0812 0.47 -0.3
968,451 + Rru_A0812 0.67 -1.6
968,599 + Rru_A0812 0.80 -2.8
968,846 - +0.4
968,902 + -0.4
968,903 - +0.1
969,061 + Rru_A0813 0.26 -0.7
969,061 + Rru_A0813 0.26 +0.7
969,061 + Rru_A0813 0.26 +0.8
969,062 - Rru_A0813 0.26 +1.1
969,274 + Rru_A0813 0.51 -1.2
969,275 - Rru_A0813 0.51 -1.0
969,275 - Rru_A0813 0.51 -5.4
969,367 + Rru_A0813 0.62 -1.1
969,367 + Rru_A0813 0.62 -0.1
969,368 - Rru_A0813 0.62 -1.8
969,455 + Rru_A0813 0.72 +0.0
969,455 + Rru_A0813 0.72 -4.2
969,455 + Rru_A0813 0.72 -2.7
969,487 + Rru_A0813 0.76 +0.1
969,488 - Rru_A0813 0.76 -2.5
969,488 - Rru_A0813 0.76 -1.5
969,496 + Rru_A0813 0.77 -0.4
969,496 + Rru_A0813 0.77 +1.4
969,496 + Rru_A0813 0.77 -1.3
969,497 - Rru_A0813 0.77 -3.6
969,497 - Rru_A0813 0.77 +0.1
969,517 + Rru_A0813 0.80 +0.1
969,518 - Rru_A0813 0.80 -0.2
969,533 - Rru_A0813 0.82 -2.3
969,879 - +1.4
969,933 + -0.1
969,933 + -2.6
969,934 - -0.3
969,941 + -2.7
969,991 + Rru_A0814 0.15 +1.9
970,076 + Rru_A0814 0.31 -1.9
970,076 + Rru_A0814 0.31 +0.6
970,077 - Rru_A0814 0.31 -1.8
970,078 + Rru_A0814 0.32 +0.2
970,078 + Rru_A0814 0.32 +0.3
970,078 + Rru_A0814 0.32 +0.1
970,078 + Rru_A0814 0.32 -2.9
970,078 + Rru_A0814 0.32 -0.2
970,078 + Rru_A0814 0.32 +0.6
970,078 + Rru_A0814 0.32 +0.3
970,079 - Rru_A0814 0.32 +0.3
970,079 - Rru_A0814 0.32 +0.7
970,079 - Rru_A0814 0.32 -0.7
970,079 - Rru_A0814 0.32 -0.9
970,079 - Rru_A0814 0.32 -0.1
970,079 - Rru_A0814 0.32 -0.9
970,191 + Rru_A0814 0.53 +0.5
970,218 - Rru_A0814 0.58 +0.0
970,258 + Rru_A0814 0.66 -2.5
970,259 - Rru_A0814 0.66 -0.7
970,276 - Rru_A0814 0.69 -1.0
970,276 - Rru_A0814 0.69 +0.6
970,294 + Rru_A0814 0.73 -3.9
970,295 - Rru_A0814 0.73 -3.4
970,372 + Rru_A0814 0.88 -0.3
970,373 - Rru_A0814 0.88 +0.7
970,393 + -2.7
970,393 + -1.2
970,393 + +0.5
970,394 - +0.4
970,394 - -2.9
970,396 + +0.3

Or see this region's nucleotide sequence