Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0803 and Rru_A0804 are separated by 411 nucleotides Rru_A0804 and Rru_A0805 are separated by 294 nucleotides
Rru_A0803: Rru_A0803 - ABC transporter component (NCBI), at 958,156 to 958,914
_A0803
Rru_A0804: Rru_A0804 - Transcriptional Regulator, LysR family (NCBI), at 959,326 to 960,291
_A0804
Rru_A0805: Rru_A0805 - conjugal transfer protein (NCBI), at 960,586 to 961,362
_A0805
Position (kb) 959
960
961 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 958.429 kb on + strand, within Rru_A0803 at 958.429 kb on + strand, within Rru_A0803 at 958.430 kb on - strand, within Rru_A0803 at 958.430 kb on - strand, within Rru_A0803 at 958.502 kb on - strand, within Rru_A0803 at 958.761 kb on - strand, within Rru_A0803 at 958.912 kb on + strand at 958.912 kb on + strand at 958.912 kb on + strand at 958.913 kb on - strand at 958.920 kb on + strand at 958.921 kb on - strand at 959.014 kb on + strand at 959.015 kb on - strand at 959.015 kb on - strand at 959.015 kb on - strand at 959.328 kb on - strand at 959.498 kb on - strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.500 kb on + strand, within Rru_A0804 at 959.501 kb on - strand, within Rru_A0804 at 959.603 kb on - strand, within Rru_A0804 at 959.603 kb on - strand, within Rru_A0804 at 959.751 kb on - strand, within Rru_A0804 at 959.751 kb on - strand, within Rru_A0804 at 959.968 kb on - strand, within Rru_A0804 at 959.968 kb on - strand, within Rru_A0804 at 959.993 kb on + strand, within Rru_A0804 at 959.993 kb on + strand, within Rru_A0804 at 959.993 kb on + strand, within Rru_A0804 at 959.993 kb on + strand, within Rru_A0804 at 959.993 kb on + strand, within Rru_A0804 at 959.994 kb on - strand, within Rru_A0804 at 960.027 kb on - strand, within Rru_A0804 at 960.337 kb on + strand at 960.337 kb on + strand at 960.337 kb on + strand at 960.337 kb on + strand at 960.338 kb on - strand at 960.364 kb on - strand at 960.364 kb on - strand at 960.364 kb on - strand at 960.396 kb on + strand at 960.396 kb on + strand at 960.396 kb on + strand at 960.397 kb on - strand at 960.520 kb on - strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.606 kb on + strand at 960.607 kb on - strand at 960.607 kb on - strand at 960.803 kb on - strand, within Rru_A0805 at 960.803 kb on - strand, within Rru_A0805 at 960.803 kb on - strand, within Rru_A0805 at 960.806 kb on + strand, within Rru_A0805 at 960.807 kb on - strand, within Rru_A0805 at 960.944 kb on + strand, within Rru_A0805
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 958,429 + Rru_A0803 0.36 -0.3 958,429 + Rru_A0803 0.36 +0.6 958,430 - Rru_A0803 0.36 -1.2 958,430 - Rru_A0803 0.36 -0.6 958,502 - Rru_A0803 0.46 -1.4 958,761 - Rru_A0803 0.80 -2.0 958,912 + -0.2 958,912 + -2.9 958,912 + +0.5 958,913 - -3.9 958,920 + +0.6 958,921 - +1.4 959,014 + +0.6 959,015 - -1.5 959,015 - +0.1 959,015 - -4.1 959,328 - +0.8 959,498 - Rru_A0804 0.18 -1.0 959,500 + Rru_A0804 0.18 -3.5 959,500 + Rru_A0804 0.18 -0.0 959,500 + Rru_A0804 0.18 -2.6 959,500 + Rru_A0804 0.18 -3.5 959,501 - Rru_A0804 0.18 -3.7 959,603 - Rru_A0804 0.29 -0.5 959,603 - Rru_A0804 0.29 -1.8 959,751 - Rru_A0804 0.44 +0.4 959,751 - Rru_A0804 0.44 -1.4 959,968 - Rru_A0804 0.66 +1.1 959,968 - Rru_A0804 0.66 +0.1 959,993 + Rru_A0804 0.69 -1.1 959,993 + Rru_A0804 0.69 +0.2 959,993 + Rru_A0804 0.69 +0.4 959,993 + Rru_A0804 0.69 -1.3 959,993 + Rru_A0804 0.69 -4.7 959,994 - Rru_A0804 0.69 +0.4 960,027 - Rru_A0804 0.73 -0.1 960,337 + -0.0 960,337 + +0.5 960,337 + +0.6 960,337 + -0.7 960,338 - -0.1 960,364 - -2.4 960,364 - -0.6 960,364 - +1.0 960,396 + -2.6 960,396 + -3.3 960,396 + +0.4 960,397 - +0.0 960,520 - -2.5 960,606 + -0.4 960,606 + +0.3 960,606 + -2.7 960,607 - +0.5 960,607 - -3.3 960,803 - Rru_A0805 0.28 +1.0 960,803 - Rru_A0805 0.28 +0.3 960,803 - Rru_A0805 0.28 -1.0 960,806 + Rru_A0805 0.28 +0.3 960,807 - Rru_A0805 0.28 -2.1 960,944 + Rru_A0805 0.46 -0.1
Or see this region's nucleotide sequence