Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0023

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_AR0021 and Rru_AR0022 are separated by 118 nucleotidesRru_AR0022 and Rru_AR0023 are separated by 95 nucleotidesRru_AR0023 and Rru_A0771 are separated by 573 nucleotides Rru_AR0021: Rru_AR0021 - 23S ribosomal RNA (NCBI), at 913,637 to 916,394 _AR0021 Rru_AR0022: Rru_AR0022 - 5S ribosomal RNA (NCBI), at 916,513 to 916,627 _AR0022 Rru_AR0023: Rru_AR0023 - tRNA-Met (NCBI), at 916,723 to 916,799 _AR0023 Rru_A0771: Rru_A0771 - hypothetical protein (NCBI), at 917,373 to 921,860 _A0771 Position (kb) 916 917Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 916.471 kb on - strandat 916.612 kb on + strand, within Rru_AR0022at 916.612 kb on + strand, within Rru_AR0022at 916.612 kb on + strand, within Rru_AR0022at 916.612 kb on + strand, within Rru_AR0022at 916.612 kb on + strand, within Rru_AR0022at 916.612 kb on + strand, within Rru_AR0022at 916.643 kb on + strandat 916.689 kb on - strandat 916.805 kb on + strandat 916.805 kb on + strandat 916.806 kb on - strandat 916.851 kb on + strandat 916.851 kb on + strandat 916.851 kb on + strandat 916.851 kb on + strandat 916.852 kb on - strandat 916.854 kb on - strandat 916.854 kb on - strandat 916.871 kb on + strandat 916.880 kb on + strandat 916.880 kb on + strandat 916.881 kb on - strandat 916.881 kb on - strandat 916.881 kb on - strandat 916.979 kb on + strandat 916.980 kb on - strandat 916.989 kb on - strandat 917.052 kb on - strandat 917.116 kb on - strandat 917.117 kb on + strandat 917.257 kb on + strandat 917.266 kb on - strandat 917.309 kb on + strandat 917.309 kb on + strandat 917.343 kb on - strandat 917.498 kb on + strandat 917.499 kb on - strandat 917.553 kb on + strandat 917.554 kb on - strandat 917.592 kb on + strandat 917.609 kb on + strandat 917.609 kb on + strandat 917.609 kb on + strandat 917.628 kb on + strandat 917.629 kb on - strandat 917.647 kb on + strandat 917.669 kb on + strandat 917.669 kb on + strandat 917.670 kb on - strandat 917.672 kb on + strandat 917.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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916,471 - +1.0
916,612 + Rru_AR0022 0.86 -1.1
916,612 + Rru_AR0022 0.86 +1.1
916,612 + Rru_AR0022 0.86 -2.8
916,612 + Rru_AR0022 0.86 -1.6
916,612 + Rru_AR0022 0.86 +0.9
916,612 + Rru_AR0022 0.86 -1.8
916,643 + +1.0
916,689 - -0.6
916,805 + +0.1
916,805 + +0.8
916,806 - -1.6
916,851 + -1.2
916,851 + +0.1
916,851 + -0.4
916,851 + -1.1
916,852 - -2.2
916,854 - -3.4
916,854 - +0.2
916,871 + -3.1
916,880 + +0.6
916,880 + -3.4
916,881 - -1.5
916,881 - +0.0
916,881 - +0.0
916,979 + +1.2
916,980 - -0.5
916,989 - -2.7
917,052 - +0.3
917,116 - -0.4
917,117 + +0.2
917,257 + -0.5
917,266 - -0.6
917,309 + +1.0
917,309 + +1.4
917,343 - -2.9
917,498 + +0.5
917,499 - +0.2
917,553 + -2.8
917,554 - +2.1
917,592 + +0.4
917,609 + -1.1
917,609 + -0.0
917,609 + +0.1
917,628 + -4.1
917,629 - +0.0
917,647 + -3.5
917,669 + -2.5
917,669 + +0.7
917,670 - -2.7
917,672 + -2.2
917,673 - -2.0

Or see this region's nucleotide sequence