Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0755 and Rru_A0756 are separated by 24 nucleotides Rru_A0756 and Rru_A0757 are separated by 164 nucleotides Rru_A0757 and Rru_A0758 overlap by 4 nucleotides
Rru_A0755: Rru_A0755 - chemotaxis sensory transducer (NCBI), at 886,552 to 888,255
_A0755
Rru_A0756: Rru_A0756 - hypothetical protein (NCBI), at 888,280 to 889,590
_A0756
Rru_A0757: Rru_A0757 - Isochorismatase hydrolase (NCBI), at 889,755 to 890,321
_A0757
Rru_A0758: Rru_A0758 - Transcriptional Regulator, AraC family (NCBI), at 890,318 to 891,334
_A0758
Position (kb) 888
889
890 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.662 kb on - strand, within Rru_A0755 at 887.662 kb on - strand, within Rru_A0755 at 887.874 kb on + strand, within Rru_A0755 at 888.198 kb on + strand at 888.199 kb on - strand at 888.505 kb on + strand, within Rru_A0756 at 888.505 kb on + strand, within Rru_A0756 at 889.021 kb on + strand, within Rru_A0756 at 889.201 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.226 kb on - strand, within Rru_A0756 at 889.226 kb on - strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.539 kb on + strand at 889.540 kb on - strand at 889.540 kb on - strand at 889.584 kb on + strand at 889.584 kb on + strand at 889.585 kb on - strand at 890.357 kb on + strand at 890.358 kb on - strand at 890.358 kb on - strand at 890.358 kb on - strand at 890.358 kb on - strand at 890.358 kb on - strand at 890.358 kb on - strand at 890.446 kb on - strand, within Rru_A0758 at 890.462 kb on + strand, within Rru_A0758 at 890.462 kb on + strand, within Rru_A0758 at 890.462 kb on + strand, within Rru_A0758 at 890.462 kb on + strand, within Rru_A0758 at 890.462 kb on + strand, within Rru_A0758 at 890.463 kb on - strand, within Rru_A0758 at 890.463 kb on - strand, within Rru_A0758 at 890.463 kb on - strand, within Rru_A0758 at 890.463 kb on - strand, within Rru_A0758 at 890.463 kb on - strand, within Rru_A0758 at 890.463 kb on - strand, within Rru_A0758
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 887,661 + Rru_A0755 0.65 -0.1 887,661 + Rru_A0755 0.65 +0.5 887,661 + Rru_A0755 0.65 -2.9 887,661 + Rru_A0755 0.65 +1.8 887,661 + Rru_A0755 0.65 -2.2 887,662 - Rru_A0755 0.65 +1.4 887,662 - Rru_A0755 0.65 -1.6 887,874 + Rru_A0755 0.78 +2.7 888,198 + -0.9 888,199 - +0.1 888,505 + Rru_A0756 0.17 +0.7 888,505 + Rru_A0756 0.17 +0.0 889,021 + Rru_A0756 0.57 -0.1 889,201 + Rru_A0756 0.70 -2.6 889,225 + Rru_A0756 0.72 -3.0 889,225 + Rru_A0756 0.72 -1.7 889,225 + Rru_A0756 0.72 -0.7 889,225 + Rru_A0756 0.72 +1.0 889,226 - Rru_A0756 0.72 -1.3 889,226 - Rru_A0756 0.72 -2.9 889,235 + Rru_A0756 0.73 +0.8 889,235 + Rru_A0756 0.73 -0.2 889,235 + Rru_A0756 0.73 +2.3 889,235 + Rru_A0756 0.73 +0.9 889,235 + Rru_A0756 0.73 -0.6 889,235 + Rru_A0756 0.73 -0.0 889,236 - Rru_A0756 0.73 -1.9 889,236 - Rru_A0756 0.73 -2.9 889,236 - Rru_A0756 0.73 -2.3 889,236 - Rru_A0756 0.73 -3.3 889,539 + -0.1 889,540 - +0.6 889,540 - +1.3 889,584 + +0.9 889,584 + +1.1 889,585 - +1.2 890,357 + +0.4 890,358 - -0.1 890,358 - -1.1 890,358 - -0.6 890,358 - +1.2 890,358 - -2.0 890,358 - -2.3 890,446 - Rru_A0758 0.13 +1.8 890,462 + Rru_A0758 0.14 -0.1 890,462 + Rru_A0758 0.14 +0.2 890,462 + Rru_A0758 0.14 +0.0 890,462 + Rru_A0758 0.14 -1.0 890,462 + Rru_A0758 0.14 -0.2 890,463 - Rru_A0758 0.14 -3.5 890,463 - Rru_A0758 0.14 +0.7 890,463 - Rru_A0758 0.14 +0.0 890,463 - Rru_A0758 0.14 -5.1 890,463 - Rru_A0758 0.14 -2.2 890,463 - Rru_A0758 0.14 -4.2
Or see this region's nucleotide sequence