Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0751 and Rru_A0752 are separated by 585 nucleotides Rru_A0752 and Rru_A0753 are separated by 226 nucleotides
Rru_A0751: Rru_A0751 - Modification methylase HemK (NCBI), at 880,072 to 881,049
_A0751
Rru_A0752: Rru_A0752 - hypothetical protein (NCBI), at 881,635 to 882,582
_A0752
Rru_A0753: Rru_A0753 - Chaperone clpB (NCBI), at 882,809 to 885,421
_A0753
Position (kb) 881
882
883 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 880.995 kb on + strand at 881.103 kb on + strand at 881.142 kb on + strand at 881.378 kb on + strand at 881.379 kb on - strand at 881.549 kb on + strand at 882.022 kb on + strand, within Rru_A0752 at 882.023 kb on - strand, within Rru_A0752 at 882.049 kb on + strand, within Rru_A0752 at 882.651 kb on - strand at 882.651 kb on - strand at 882.651 kb on - strand at 882.714 kb on + strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.718 kb on + strand at 882.719 kb on - strand at 882.729 kb on + strand at 882.729 kb on + strand at 882.729 kb on + strand at 882.729 kb on + strand at 882.730 kb on - strand at 882.757 kb on + strand at 882.758 kb on - strand at 882.758 kb on - strand at 882.785 kb on - strand at 882.803 kb on + strand at 882.803 kb on + strand at 882.804 kb on - strand at 882.804 kb on - strand at 882.809 kb on - strand at 882.931 kb on + strand at 882.931 kb on + strand at 882.931 kb on + strand at 882.931 kb on + strand at 882.932 kb on - strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.050 kb on - strand at 883.050 kb on - strand at 883.050 kb on - strand at 883.280 kb on + strand, within Rru_A0753 at 883.281 kb on - strand, within Rru_A0753 at 883.298 kb on + strand, within Rru_A0753 at 883.298 kb on + strand, within Rru_A0753 at 883.299 kb on - strand, within Rru_A0753 at 883.299 kb on - strand, within Rru_A0753
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 880,995 + +0.2 881,103 + -2.9 881,142 + +0.5 881,378 + +0.4 881,379 - -2.0 881,549 + +1.2 882,022 + Rru_A0752 0.41 -4.1 882,023 - Rru_A0752 0.41 +0.4 882,049 + Rru_A0752 0.44 -1.4 882,651 - -3.5 882,651 - -1.2 882,651 - +0.5 882,714 + -1.0 882,715 - -2.4 882,715 - -2.2 882,715 - -2.0 882,715 - -1.5 882,715 - -2.2 882,715 - +0.0 882,718 + +1.0 882,719 - +0.9 882,729 + +0.6 882,729 + +1.9 882,729 + +1.4 882,729 + +0.5 882,730 - -4.6 882,757 + +0.6 882,758 - +0.8 882,758 - -0.4 882,785 - -1.3 882,803 + -4.0 882,803 + +0.7 882,804 - +1.0 882,804 - -4.3 882,809 - -3.3 882,931 + -1.6 882,931 + -3.9 882,931 + -0.1 882,931 + +2.8 882,932 - +1.7 883,049 + -1.7 883,049 + -2.0 883,049 + -3.1 883,049 + -0.3 883,049 + -0.6 883,049 + -1.1 883,050 - -3.7 883,050 - -0.6 883,050 - -2.1 883,280 + Rru_A0753 0.18 -3.2 883,281 - Rru_A0753 0.18 -2.7 883,298 + Rru_A0753 0.19 -0.5 883,298 + Rru_A0753 0.19 -1.0 883,299 - Rru_A0753 0.19 -4.9 883,299 - Rru_A0753 0.19 -2.4
Or see this region's nucleotide sequence