Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0717 and Rru_A0718 are separated by 764 nucleotides Rru_A0718 and Rru_A0719 are separated by 133 nucleotides Rru_A0719 and Rru_A0720 are separated by 94 nucleotides
Rru_A0717: Rru_A0717 - phage repressor (NCBI), at 844,364 to 845,083
_A0717
Rru_A0718: Rru_A0718 - chemotaxis sensory transducer (NCBI), at 845,848 to 847,857
_A0718
Rru_A0719: Rru_A0719 - hypothetical protein (NCBI), at 847,991 to 848,746
_A0719
Rru_A0720: Rru_A0720 - Transcriptional Regulator, MarR family (NCBI), at 848,841 to 849,335
_A0720
Position (kb) 845
846
847
848 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 845.062 kb on + strand at 845.177 kb on - strand at 845.238 kb on + strand at 845.315 kb on - strand at 845.411 kb on + strand at 845.440 kb on + strand at 845.564 kb on - strand at 845.601 kb on - strand at 845.703 kb on - strand at 845.703 kb on - strand at 845.703 kb on - strand at 845.703 kb on - strand at 845.705 kb on + strand at 845.705 kb on + strand at 845.706 kb on - strand at 845.778 kb on + strand at 845.860 kb on - strand at 845.865 kb on + strand at 845.885 kb on + strand at 845.946 kb on + strand at 846.066 kb on - strand, within Rru_A0718 at 846.150 kb on + strand, within Rru_A0718 at 846.262 kb on + strand, within Rru_A0718 at 846.262 kb on + strand, within Rru_A0718 at 846.262 kb on + strand, within Rru_A0718 at 846.262 kb on + strand, within Rru_A0718 at 846.262 kb on + strand, within Rru_A0718 at 846.263 kb on - strand, within Rru_A0718 at 846.263 kb on - strand, within Rru_A0718 at 846.329 kb on - strand, within Rru_A0718 at 846.528 kb on + strand, within Rru_A0718 at 846.560 kb on - strand, within Rru_A0718 at 846.560 kb on - strand, within Rru_A0718 at 846.560 kb on - strand, within Rru_A0718 at 846.572 kb on + strand, within Rru_A0718 at 846.572 kb on + strand, within Rru_A0718 at 846.573 kb on - strand, within Rru_A0718 at 846.573 kb on - strand, within Rru_A0718 at 846.573 kb on - strand, within Rru_A0718 at 847.803 kb on + strand at 847.803 kb on + strand at 847.804 kb on - strand at 847.933 kb on + strand at 847.933 kb on + strand at 847.934 kb on - strand at 847.934 kb on - strand at 847.936 kb on + strand at 847.936 kb on + strand at 847.937 kb on - strand at 847.938 kb on + strand at 847.938 kb on + strand at 847.938 kb on + strand at 847.939 kb on - strand at 847.939 kb on - strand at 847.939 kb on - strand at 847.939 kb on - strand at 847.939 kb on - strand at 848.017 kb on - strand at 848.123 kb on + strand, within Rru_A0719 at 848.124 kb on - strand, within Rru_A0719 at 848.124 kb on - strand, within Rru_A0719 at 848.135 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.292 kb on - strand, within Rru_A0719
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 845,062 + +0.1 845,177 - -1.8 845,238 + -0.6 845,315 - +0.7 845,411 + -0.1 845,440 + -2.2 845,564 - +0.7 845,601 - -1.1 845,703 - -5.1 845,703 - -3.9 845,703 - -1.2 845,703 - -2.0 845,705 + +0.3 845,705 + +1.7 845,706 - -2.3 845,778 + -0.3 845,860 - +0.5 845,865 + -2.8 845,885 + +1.6 845,946 + +1.4 846,066 - Rru_A0718 0.11 -2.9 846,150 + Rru_A0718 0.15 -0.8 846,262 + Rru_A0718 0.21 -3.8 846,262 + Rru_A0718 0.21 +1.1 846,262 + Rru_A0718 0.21 -2.5 846,262 + Rru_A0718 0.21 -1.7 846,262 + Rru_A0718 0.21 +0.5 846,263 - Rru_A0718 0.21 -0.4 846,263 - Rru_A0718 0.21 -3.8 846,329 - Rru_A0718 0.24 +0.9 846,528 + Rru_A0718 0.34 -1.5 846,560 - Rru_A0718 0.35 -2.5 846,560 - Rru_A0718 0.35 -0.1 846,560 - Rru_A0718 0.35 +0.0 846,572 + Rru_A0718 0.36 -2.9 846,572 + Rru_A0718 0.36 -0.5 846,573 - Rru_A0718 0.36 +1.1 846,573 - Rru_A0718 0.36 +0.7 846,573 - Rru_A0718 0.36 +0.1 847,803 + -4.1 847,803 + -0.5 847,804 - -1.3 847,933 + +1.0 847,933 + -0.4 847,934 - +0.5 847,934 - -1.4 847,936 + -1.9 847,936 + -4.1 847,937 - -1.4 847,938 + +0.6 847,938 + +0.8 847,938 + +1.0 847,939 - -1.1 847,939 - -0.2 847,939 - -2.3 847,939 - -2.6 847,939 - -2.0 848,017 - +1.0 848,123 + Rru_A0719 0.17 -0.9 848,124 - Rru_A0719 0.18 -0.7 848,124 - Rru_A0719 0.18 -1.1 848,135 + Rru_A0719 0.19 -2.8 848,225 + Rru_A0719 0.31 +0.2 848,225 + Rru_A0719 0.31 +0.5 848,225 + Rru_A0719 0.31 +1.2 848,225 + Rru_A0719 0.31 +0.3 848,225 + Rru_A0719 0.31 -0.4 848,225 + Rru_A0719 0.31 +0.5 848,225 + Rru_A0719 0.31 +1.1 848,225 + Rru_A0719 0.31 +1.4 848,225 + Rru_A0719 0.31 +1.3 848,226 - Rru_A0719 0.31 +0.6 848,226 - Rru_A0719 0.31 +0.3 848,226 - Rru_A0719 0.31 +1.0 848,226 - Rru_A0719 0.31 +0.5 848,226 - Rru_A0719 0.31 +0.1 848,226 - Rru_A0719 0.31 -4.3 848,226 - Rru_A0719 0.31 -2.5 848,291 + Rru_A0719 0.40 -0.8 848,291 + Rru_A0719 0.40 -0.2 848,291 + Rru_A0719 0.40 -1.1 848,291 + Rru_A0719 0.40 -1.4 848,291 + Rru_A0719 0.40 +1.6 848,292 - Rru_A0719 0.40 +0.9
Or see this region's nucleotide sequence