Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0650 and Rru_A0651 are separated by 256 nucleotides Rru_A0651 and Rru_A0652 overlap by 4 nucleotides Rru_A0652 and Rru_A0653 overlap by 1 nucleotides Rru_A0653 and Rru_A0654 are separated by 47 nucleotides
Rru_A0650: Rru_A0650 - Cytidine/deoxycytidylate deaminase, zinc-binding region (NCBI), at 771,381 to 771,860
_A0650
Rru_A0651: Rru_A0651 - Glutamine amidotransferase class-I (NCBI), at 772,117 to 772,845
_A0651
Rru_A0652: Rru_A0652 - Pseudouridine synthase, Rsu (NCBI), at 772,842 to 773,723
_A0652
Rru_A0653: Rru_A0653 - hypothetical protein (NCBI), at 773,723 to 774,301
_A0653
Rru_A0654: Rru_A0654 - Multiple antibiotic resistance (MarC)-related proteins (NCBI), at 774,349 to 775,002
_A0654
Position (kb) 772
773
774 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 771.981 kb on + strand at 771.982 kb on - strand at 771.990 kb on + strand at 771.990 kb on + strand at 771.990 kb on + strand at 771.991 kb on - strand at 771.991 kb on - strand at 772.031 kb on - strand at 772.031 kb on - strand at 772.041 kb on + strand at 772.042 kb on - strand at 772.189 kb on + strand at 772.190 kb on - strand, within Rru_A0651 at 772.190 kb on - strand, within Rru_A0651 at 772.190 kb on - strand, within Rru_A0651 at 772.190 kb on - strand, within Rru_A0651 at 772.194 kb on + strand, within Rru_A0651 at 772.194 kb on + strand, within Rru_A0651 at 772.195 kb on - strand, within Rru_A0651 at 772.204 kb on - strand, within Rru_A0651 at 772.204 kb on - strand, within Rru_A0651 at 772.208 kb on - strand, within Rru_A0651 at 772.208 kb on - strand, within Rru_A0651 at 772.208 kb on - strand, within Rru_A0651 at 772.506 kb on + strand, within Rru_A0651 at 772.507 kb on - strand, within Rru_A0651 at 772.507 kb on - strand, within Rru_A0651 at 772.507 kb on - strand, within Rru_A0651 at 772.771 kb on + strand, within Rru_A0651 at 772.891 kb on + strand at 772.891 kb on + strand at 772.891 kb on + strand at 772.891 kb on + strand at 772.891 kb on + strand at 772.891 kb on + strand at 772.892 kb on - strand at 772.892 kb on - strand at 773.050 kb on - strand, within Rru_A0652 at 773.331 kb on + strand, within Rru_A0652 at 773.332 kb on - strand, within Rru_A0652 at 773.475 kb on + strand, within Rru_A0652 at 773.706 kb on - strand at 773.721 kb on + strand at 773.721 kb on + strand at 773.722 kb on - strand at 773.996 kb on - strand, within Rru_A0653 at 774.496 kb on - strand, within Rru_A0654 at 774.497 kb on + strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 771,981 + +1.7 771,982 - +0.8 771,990 + -2.6 771,990 + -2.5 771,990 + -2.2 771,991 - -0.4 771,991 - -0.5 772,031 - -1.9 772,031 - +0.9 772,041 + -4.2 772,042 - +1.9 772,189 + +1.0 772,190 - Rru_A0651 0.10 -1.6 772,190 - Rru_A0651 0.10 -0.9 772,190 - Rru_A0651 0.10 +0.4 772,190 - Rru_A0651 0.10 -0.3 772,194 + Rru_A0651 0.11 +0.2 772,194 + Rru_A0651 0.11 +2.1 772,195 - Rru_A0651 0.11 -2.0 772,204 - Rru_A0651 0.12 +1.1 772,204 - Rru_A0651 0.12 -1.4 772,208 - Rru_A0651 0.12 -2.7 772,208 - Rru_A0651 0.12 -0.8 772,208 - Rru_A0651 0.12 -1.9 772,506 + Rru_A0651 0.53 +0.8 772,507 - Rru_A0651 0.53 -2.8 772,507 - Rru_A0651 0.53 -5.1 772,507 - Rru_A0651 0.53 -3.6 772,771 + Rru_A0651 0.90 +1.5 772,891 + -4.1 772,891 + +1.0 772,891 + -2.8 772,891 + +0.3 772,891 + -0.9 772,891 + -1.8 772,892 - -2.4 772,892 - -1.3 773,050 - Rru_A0652 0.24 -1.2 773,331 + Rru_A0652 0.55 -0.1 773,332 - Rru_A0652 0.56 -1.3 773,475 + Rru_A0652 0.72 -0.6 773,706 - -1.1 773,721 + +0.9 773,721 + +1.7 773,722 - -0.2 773,996 - Rru_A0653 0.47 +0.1 774,496 - Rru_A0654 0.22 -2.2 774,497 + Rru_A0654 0.23 -3.2 774,498 - Rru_A0654 0.23 -2.6 774,498 - Rru_A0654 0.23 -1.8 774,498 - Rru_A0654 0.23 -0.4 774,498 - Rru_A0654 0.23 +1.1 774,581 + Rru_A0654 0.35 -0.9 774,581 + Rru_A0654 0.35 -1.6 774,581 + Rru_A0654 0.35 +0.1
Or see this region's nucleotide sequence