Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0590

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0588 and Rru_A0589 overlap by 4 nucleotidesRru_A0589 and Rru_A0590 overlap by 1 nucleotidesRru_A0590 and Rru_A0591 overlap by 4 nucleotides Rru_A0588: Rru_A0588 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 698,645 to 699,661 _A0588 Rru_A0589: Rru_A0589 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 699,658 to 700,650 _A0589 Rru_A0590: Rru_A0590 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 700,650 to 701,558 _A0590 Rru_A0591: Rru_A0591 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 701,555 to 702,481 _A0591 Position (kb) 700 701 702Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 699.689 kb on + strandat 699.689 kb on + strandat 699.689 kb on + strandat 699.690 kb on - strandat 699.690 kb on - strandat 699.893 kb on + strand, within Rru_A0589at 699.893 kb on + strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.959 kb on - strand, within Rru_A0589at 699.959 kb on - strand, within Rru_A0589at 700.191 kb on - strand, within Rru_A0589at 700.411 kb on + strand, within Rru_A0589at 700.411 kb on + strand, within Rru_A0589at 700.412 kb on - strand, within Rru_A0589at 700.885 kb on + strand, within Rru_A0590at 700.885 kb on + strand, within Rru_A0590at 700.886 kb on - strand, within Rru_A0590at 700.886 kb on - strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.194 kb on + strand, within Rru_A0590at 701.194 kb on + strand, within Rru_A0590at 701.263 kb on + strand, within Rru_A0590at 701.264 kb on - strand, within Rru_A0590at 701.264 kb on - strand, within Rru_A0590at 701.356 kb on + strand, within Rru_A0590at 701.356 kb on + strand, within Rru_A0590at 701.357 kb on - strand, within Rru_A0590at 701.357 kb on - strand, within Rru_A0590at 701.458 kb on + strand, within Rru_A0590at 701.458 kb on + strand, within Rru_A0590at 701.459 kb on - strand, within Rru_A0590at 701.459 kb on - strand, within Rru_A0590at 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.593 kb on - strandat 701.593 kb on - strandat 701.593 kb on - strandat 701.697 kb on + strand, within Rru_A0591at 701.697 kb on + strand, within Rru_A0591at 701.697 kb on + strand, within Rru_A0591at 701.698 kb on - strand, within Rru_A0591at 701.698 kb on - strand, within Rru_A0591at 701.778 kb on + strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.917 kb on + strand, within Rru_A0591at 701.917 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.920 kb on - strand, within Rru_A0591at 701.920 kb on - strand, within Rru_A0591at 701.964 kb on + strand, within Rru_A0591at 701.965 kb on - strand, within Rru_A0591at 701.970 kb on - strand, within Rru_A0591at 702.155 kb on + strand, within Rru_A0591at 702.294 kb on + strand, within Rru_A0591at 702.295 kb on - strand, within Rru_A0591at 702.322 kb on + strand, within Rru_A0591at 702.322 kb on + strand, within Rru_A0591at 702.323 kb on - strand, within Rru_A0591at 702.324 kb on + strand, within Rru_A0591at 702.325 kb on - strand, within Rru_A0591at 702.325 kb on - strand, within Rru_A0591at 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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699,689 + -1.8
699,689 + +0.4
699,689 + -1.9
699,690 - -0.3
699,690 - +2.5
699,893 + Rru_A0589 0.24 -3.5
699,893 + Rru_A0589 0.24 -3.8
699,894 - Rru_A0589 0.24 -1.1
699,894 - Rru_A0589 0.24 +0.4
699,894 - Rru_A0589 0.24 +1.4
699,912 - Rru_A0589 0.26 -1.1
699,912 - Rru_A0589 0.26 +0.9
699,912 - Rru_A0589 0.26 -0.5
699,912 - Rru_A0589 0.26 -0.1
699,956 + Rru_A0589 0.30 +1.0
699,956 + Rru_A0589 0.30 +1.1
699,956 + Rru_A0589 0.30 +0.7
699,957 - Rru_A0589 0.30 +0.4
699,957 - Rru_A0589 0.30 +0.5
699,957 - Rru_A0589 0.30 -1.2
699,957 - Rru_A0589 0.30 -2.0
699,958 + Rru_A0589 0.30 +0.1
699,958 + Rru_A0589 0.30 -1.5
699,958 + Rru_A0589 0.30 -1.5
699,958 + Rru_A0589 0.30 +1.1
699,958 + Rru_A0589 0.30 -0.5
699,959 - Rru_A0589 0.30 +0.1
699,959 - Rru_A0589 0.30 -1.2
700,191 - Rru_A0589 0.54 -4.3
700,411 + Rru_A0589 0.76 +1.8
700,411 + Rru_A0589 0.76 +0.2
700,412 - Rru_A0589 0.76 -2.1
700,885 + Rru_A0590 0.26 +0.0
700,885 + Rru_A0590 0.26 -3.2
700,886 - Rru_A0590 0.26 -3.0
700,886 - Rru_A0590 0.26 -0.5
701,125 + Rru_A0590 0.52 +1.4
701,125 + Rru_A0590 0.52 -0.6
701,125 + Rru_A0590 0.52 -0.1
701,125 + Rru_A0590 0.52 -0.1
701,125 + Rru_A0590 0.52 +2.3
701,126 - Rru_A0590 0.52 +0.6
701,126 - Rru_A0590 0.52 -0.6
701,126 - Rru_A0590 0.52 +1.0
701,126 - Rru_A0590 0.52 +1.7
701,194 + Rru_A0590 0.60 -0.4
701,194 + Rru_A0590 0.60 -2.9
701,263 + Rru_A0590 0.67 +1.0
701,264 - Rru_A0590 0.68 +0.0
701,264 - Rru_A0590 0.68 -2.7
701,356 + Rru_A0590 0.78 +0.7
701,356 + Rru_A0590 0.78 +1.2
701,357 - Rru_A0590 0.78 +0.2
701,357 - Rru_A0590 0.78 -3.6
701,458 + Rru_A0590 0.89 -0.0
701,458 + Rru_A0590 0.89 +1.7
701,459 - Rru_A0590 0.89 +0.6
701,459 - Rru_A0590 0.89 -1.5
701,592 + +1.0
701,592 + -1.3
701,592 + -0.0
701,592 + -2.2
701,592 + +1.5
701,592 + +0.4
701,592 + -2.1
701,592 + -3.3
701,593 - -1.7
701,593 - +1.3
701,593 - +0.8
701,697 + Rru_A0591 0.15 +0.5
701,697 + Rru_A0591 0.15 +0.2
701,697 + Rru_A0591 0.15 -0.0
701,698 - Rru_A0591 0.15 +0.2
701,698 - Rru_A0591 0.15 +0.3
701,778 + Rru_A0591 0.24 -0.4
701,779 - Rru_A0591 0.24 -2.8
701,779 - Rru_A0591 0.24 -1.9
701,779 - Rru_A0591 0.24 +0.4
701,880 - Rru_A0591 0.35 -5.7
701,880 - Rru_A0591 0.35 -1.1
701,880 - Rru_A0591 0.35 +0.9
701,917 + Rru_A0591 0.39 +0.9
701,917 + Rru_A0591 0.39 +1.8
701,919 + Rru_A0591 0.39 -0.1
701,919 + Rru_A0591 0.39 -0.5
701,919 + Rru_A0591 0.39 -0.0
701,920 - Rru_A0591 0.39 +0.7
701,920 - Rru_A0591 0.39 -1.9
701,964 + Rru_A0591 0.44 -0.3
701,965 - Rru_A0591 0.44 -1.6
701,970 - Rru_A0591 0.45 -0.6
702,155 + Rru_A0591 0.65 -2.9
702,294 + Rru_A0591 0.80 +1.7
702,295 - Rru_A0591 0.80 -0.6
702,322 + Rru_A0591 0.83 -4.5
702,322 + Rru_A0591 0.83 -2.6
702,323 - Rru_A0591 0.83 -2.5
702,324 + Rru_A0591 0.83 +1.9
702,325 - Rru_A0591 0.83 -2.8
702,325 - Rru_A0591 0.83 -1.6
702,476 + -0.3
702,476 + +0.4
702,476 + +1.3
702,476 + +0.3
702,476 + +1.0
702,477 - +0.4
702,477 - +2.9
702,477 - -0.4
702,477 - -2.8

Or see this region's nucleotide sequence