Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0570 and Rru_A0571 are separated by 92 nucleotides Rru_A0571 and Rru_A0572 are separated by 130 nucleotides
Rru_A0570: Rru_A0570 - Glutamate--cysteine ligase (NCBI), at 676,783 to 678,153
_A0570
Rru_A0571: Rru_A0571 - hypothetical protein (NCBI), at 678,246 to 678,989
_A0571
Rru_A0572: Rru_A0572 - 4-hydroxybenzoate polyprenyl transferase (NCBI), at 679,120 to 680,043
_A0572
Position (kb) 678
679 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 678.248 kb on - strand at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.426 kb on + strand, within Rru_A0571 at 678.427 kb on - strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.958 kb on + strand at 678.958 kb on + strand at 678.959 kb on - strand at 678.959 kb on - strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.040 kb on + strand at 679.047 kb on + strand at 679.047 kb on + strand at 679.049 kb on + strand at 679.049 kb on + strand at 679.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 678,248 - -5.5 678,347 + Rru_A0571 0.14 +0.9 678,347 + Rru_A0571 0.14 +0.2 678,347 + Rru_A0571 0.14 -2.2 678,348 - Rru_A0571 0.14 +0.5 678,348 - Rru_A0571 0.14 +0.6 678,426 + Rru_A0571 0.24 +0.4 678,427 - Rru_A0571 0.24 +0.1 678,522 + Rru_A0571 0.37 +1.0 678,522 + Rru_A0571 0.37 +0.8 678,523 - Rru_A0571 0.37 +0.5 678,523 - Rru_A0571 0.37 +1.4 678,700 + Rru_A0571 0.61 -0.1 678,700 + Rru_A0571 0.61 +0.4 678,701 - Rru_A0571 0.61 +0.6 678,701 - Rru_A0571 0.61 -3.9 678,701 - Rru_A0571 0.61 +0.9 678,899 - Rru_A0571 0.88 +0.3 678,899 - Rru_A0571 0.88 +0.7 678,958 + +1.0 678,958 + -0.3 678,959 - +1.3 678,959 - +0.5 679,035 + +1.1 679,035 + -0.5 679,035 + +2.0 679,035 + +0.4 679,035 + +1.2 679,036 - -1.7 679,036 - -3.3 679,036 - -2.8 679,036 - -2.0 679,036 - -3.1 679,040 + -2.2 679,047 + -0.9 679,047 + -0.2 679,049 + -0.5 679,049 + -0.5 679,050 - -3.1
Or see this region's nucleotide sequence