Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0564

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0563 and Rru_A0564 are separated by 188 nucleotidesRru_A0564 and Rru_A0565 are separated by 67 nucleotidesRru_A0565 and Rru_A0566 are separated by 185 nucleotides Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852 _A0563 Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165 _A0564 Rru_A0565: Rru_A0565 - hypothetical protein (NCBI), at 668,233 to 668,568 _A0565 Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314 _A0566 Position (kb) 667 668 669Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 666.176 kb on + strand, within Rru_A0563at 666.177 kb on - strand, within Rru_A0563at 666.177 kb on - strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.308 kb on - strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.346 kb on - strand, within Rru_A0563at 666.346 kb on - strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.369 kb on - strand, within Rru_A0563at 666.369 kb on - strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.374 kb on + strand, within Rru_A0563at 666.656 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.687 kb on - strand, within Rru_A0563at 666.687 kb on - strand, within Rru_A0563at 666.980 kb on + strandat 666.981 kb on - strandat 667.007 kb on - strandat 667.007 kb on - strandat 667.011 kb on + strandat 667.011 kb on + strandat 667.011 kb on + strandat 667.212 kb on + strand, within Rru_A0564at 667.213 kb on - strand, within Rru_A0564at 667.232 kb on + strand, within Rru_A0564at 667.353 kb on - strand, within Rru_A0564at 667.497 kb on + strand, within Rru_A0564at 667.497 kb on + strand, within Rru_A0564at 667.497 kb on + strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.869 kb on + strand, within Rru_A0564at 667.940 kb on + strand, within Rru_A0564at 668.234 kb on + strandat 668.234 kb on + strandat 668.234 kb on + strandat 668.234 kb on + strandat 668.234 kb on + strandat 668.235 kb on - strandat 668.235 kb on - strandat 668.256 kb on + strandat 668.257 kb on - strandat 668.703 kb on - strandat 668.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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666,176 + Rru_A0563 0.47 -0.0
666,177 - Rru_A0563 0.47 -2.8
666,177 - Rru_A0563 0.47 -0.6
666,272 + Rru_A0563 0.54 -3.3
666,272 + Rru_A0563 0.54 -0.2
666,272 + Rru_A0563 0.54 +0.1
666,273 - Rru_A0563 0.54 +0.2
666,273 - Rru_A0563 0.54 +0.5
666,273 - Rru_A0563 0.54 -2.4
666,273 - Rru_A0563 0.54 +0.2
666,308 - Rru_A0563 0.57 +0.5
666,345 + Rru_A0563 0.60 +0.4
666,345 + Rru_A0563 0.60 -2.1
666,345 + Rru_A0563 0.60 -0.1
666,345 + Rru_A0563 0.60 +0.1
666,346 - Rru_A0563 0.60 -3.4
666,346 - Rru_A0563 0.60 +1.7
666,347 + Rru_A0563 0.60 -2.0
666,347 + Rru_A0563 0.60 +1.5
666,347 + Rru_A0563 0.60 +0.9
666,347 + Rru_A0563 0.60 -0.2
666,347 + Rru_A0563 0.60 +0.3
666,348 - Rru_A0563 0.60 +1.4
666,348 - Rru_A0563 0.60 -3.9
666,348 - Rru_A0563 0.60 -1.4
666,368 + Rru_A0563 0.62 -1.2
666,368 + Rru_A0563 0.62 +1.8
666,368 + Rru_A0563 0.62 -0.5
666,369 - Rru_A0563 0.62 -2.1
666,369 - Rru_A0563 0.62 +0.7
666,372 + Rru_A0563 0.62 +1.7
666,372 + Rru_A0563 0.62 +1.4
666,372 + Rru_A0563 0.62 -2.0
666,372 + Rru_A0563 0.62 +1.1
666,372 + Rru_A0563 0.62 +0.7
666,373 - Rru_A0563 0.62 -2.7
666,373 - Rru_A0563 0.62 -5.2
666,373 - Rru_A0563 0.62 +0.3
666,373 - Rru_A0563 0.62 -0.4
666,373 - Rru_A0563 0.62 +0.4
666,373 - Rru_A0563 0.62 -3.2
666,373 - Rru_A0563 0.62 +0.3
666,374 + Rru_A0563 0.62 +0.5
666,656 + Rru_A0563 0.84 -0.1
666,686 + Rru_A0563 0.87 +0.1
666,686 + Rru_A0563 0.87 +0.3
666,686 + Rru_A0563 0.87 -0.9
666,686 + Rru_A0563 0.87 -0.4
666,687 - Rru_A0563 0.87 -2.9
666,687 - Rru_A0563 0.87 -0.2
666,980 + +1.3
666,981 - +0.6
667,007 - +0.3
667,007 - -1.1
667,011 + -1.7
667,011 + -2.2
667,011 + -3.9
667,212 + Rru_A0564 0.15 +1.3
667,213 - Rru_A0564 0.15 -0.2
667,232 + Rru_A0564 0.17 -0.0
667,353 - Rru_A0564 0.28 +0.3
667,497 + Rru_A0564 0.41 -1.8
667,497 + Rru_A0564 0.41 -1.9
667,497 + Rru_A0564 0.41 +0.3
667,498 - Rru_A0564 0.41 +2.9
667,498 - Rru_A0564 0.41 +0.8
667,498 - Rru_A0564 0.41 +1.4
667,498 - Rru_A0564 0.41 -1.5
667,498 - Rru_A0564 0.41 -1.8
667,869 + Rru_A0564 0.74 +1.4
667,940 + Rru_A0564 0.80 +1.0
668,234 + +0.6
668,234 + -2.5
668,234 + -1.5
668,234 + +0.7
668,234 + +0.1
668,235 - -1.3
668,235 - -0.6
668,256 + +1.1
668,257 - -0.9
668,703 - +0.8
668,703 - -0.7

Or see this region's nucleotide sequence