Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0539 and Rru_A0540 are separated by 25 nucleotides Rru_A0540 and Rru_A0541 are separated by 49 nucleotides
Rru_A0539: Rru_A0539 - Flagellar biosynthesis protein FlhA (NCBI), at 634,069 to 636,231
_A0539
Rru_A0540: Rru_A0540 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 636,257 to 637,594
_A0540
Rru_A0541: Rru_A0541 - MotA/TolQ/ExbB proton channel (NCBI), at 637,644 to 638,462
_A0541
Position (kb) 636
637
638 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 635.438 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 636.238 kb on - strand at 636.315 kb on + strand at 636.316 kb on - strand at 636.530 kb on - strand, within Rru_A0540 at 636.805 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.231 kb on - strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.652 kb on - strand at 637.652 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.750 kb on + strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 638.019 kb on - strand, within Rru_A0541
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 635,438 + Rru_A0539 0.63 +0.2 635,438 + Rru_A0539 0.63 -0.2 635,438 + Rru_A0539 0.63 +0.3 635,439 - Rru_A0539 0.63 -0.0 635,439 - Rru_A0539 0.63 -0.9 635,439 - Rru_A0539 0.63 +0.1 635,439 - Rru_A0539 0.63 +0.5 635,439 - Rru_A0539 0.63 -3.6 636,238 - -2.0 636,315 + +1.6 636,316 - -3.6 636,530 - Rru_A0540 0.20 -1.3 636,805 + Rru_A0540 0.41 +0.3 637,228 + Rru_A0540 0.73 -3.3 637,228 + Rru_A0540 0.73 +0.4 637,229 - Rru_A0540 0.73 +1.3 637,229 - Rru_A0540 0.73 -0.0 637,230 + Rru_A0540 0.73 -2.1 637,230 + Rru_A0540 0.73 -2.1 637,231 - Rru_A0540 0.73 -0.3 637,308 + Rru_A0540 0.79 -3.4 637,308 + Rru_A0540 0.79 -0.1 637,308 + Rru_A0540 0.79 -2.9 637,308 + Rru_A0540 0.79 +0.3 637,308 + Rru_A0540 0.79 -2.9 637,309 - Rru_A0540 0.79 -0.5 637,309 - Rru_A0540 0.79 +0.5 637,309 - Rru_A0540 0.79 +0.5 637,652 - +0.2 637,652 - +0.4 637,655 - -3.9 637,655 - -0.0 637,655 - -2.6 637,655 - +1.7 637,750 + Rru_A0541 0.13 -0.5 637,751 - Rru_A0541 0.13 -1.0 637,751 - Rru_A0541 0.13 +1.2 637,751 - Rru_A0541 0.13 -2.7 637,840 + Rru_A0541 0.24 +1.3 637,840 + Rru_A0541 0.24 -3.6 637,840 + Rru_A0541 0.24 +0.3 637,840 + Rru_A0541 0.24 +1.6 637,840 + Rru_A0541 0.24 -1.4 637,841 - Rru_A0541 0.24 +1.0 637,841 - Rru_A0541 0.24 +0.7 637,841 - Rru_A0541 0.24 -0.2 637,841 - Rru_A0541 0.24 +1.7 638,019 - Rru_A0541 0.46 -1.1
Or see this region's nucleotide sequence