Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0535

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0533 and Rru_A0534 are separated by 219 nucleotidesRru_A0534 and Rru_A0535 are separated by 109 nucleotidesRru_A0535 and Rru_A0536 are separated by 135 nucleotides Rru_A0533: Rru_A0533 - GTP-binding signal recognition particle SRP54, G-domain (NCBI), at 628,105 to 629,211 _A0533 Rru_A0534: Rru_A0534 - hypothetical protein (NCBI), at 629,431 to 629,958 _A0534 Rru_A0535: Rru_A0535 - Protein of unknown function DUF6, transmembrane (NCBI), at 630,068 to 630,982 _A0535 Rru_A0536: Rru_A0536 - Transcriptional Regulator, AraC family (NCBI), at 631,118 to 632,032 _A0536 Position (kb) 630 631Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 629.114 kb on + strandat 629.114 kb on + strandat 629.114 kb on + strandat 629.114 kb on + strandat 629.115 kb on - strandat 629.115 kb on - strandat 629.115 kb on - strandat 629.115 kb on - strandat 629.122 kb on - strandat 629.225 kb on + strandat 629.226 kb on - strandat 629.242 kb on - strandat 629.308 kb on + strandat 629.309 kb on - strandat 629.309 kb on - strandat 629.309 kb on - strandat 629.316 kb on + strandat 629.316 kb on + strandat 629.317 kb on - strandat 629.361 kb on - strandat 629.416 kb on + strandat 629.416 kb on + strandat 629.417 kb on - strandat 629.417 kb on - strandat 629.417 kb on - strandat 629.522 kb on + strand, within Rru_A0534at 629.522 kb on + strand, within Rru_A0534at 629.522 kb on + strand, within Rru_A0534at 629.523 kb on - strand, within Rru_A0534at 629.590 kb on - strand, within Rru_A0534at 629.598 kb on - strand, within Rru_A0534at 629.963 kb on - strandat 629.976 kb on - strandat 630.015 kb on + strandat 630.043 kb on + strandat 630.043 kb on + strandat 630.069 kb on + strandat 630.069 kb on + strandat 630.070 kb on - strandat 630.172 kb on - strand, within Rru_A0535at 630.172 kb on - strand, within Rru_A0535at 630.182 kb on + strand, within Rru_A0535at 630.191 kb on + strand, within Rru_A0535at 630.191 kb on + strand, within Rru_A0535at 630.270 kb on + strand, within Rru_A0535at 630.270 kb on + strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.309 kb on + strand, within Rru_A0535at 630.309 kb on + strand, within Rru_A0535at 630.310 kb on - strand, within Rru_A0535at 630.327 kb on + strand, within Rru_A0535at 630.328 kb on - strand, within Rru_A0535at 630.328 kb on - strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.487 kb on - strand, within Rru_A0535at 630.487 kb on - strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.947 kb on + strandat 630.947 kb on + strandat 630.948 kb on - strandat 630.948 kb on - strandat 631.004 kb on + strandat 631.083 kb on + strandat 631.083 kb on + strandat 631.083 kb on + strandat 631.084 kb on - strandat 631.219 kb on - strand, within Rru_A0536at 631.270 kb on + strand, within Rru_A0536at 631.271 kb on - strand, within Rru_A0536at 631.271 kb on - strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.431 kb on - strand, within Rru_A0536at 631.432 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.629 kb on - strand, within Rru_A0536at 631.629 kb on - strand, within Rru_A0536at 631.630 kb on + strand, within Rru_A0536at 631.630 kb on + strand, within Rru_A0536at 631.631 kb on - strand, within Rru_A0536at 631.631 kb on - strand, within Rru_A0536at 631.838 kb on + strand, within Rru_A0536at 631.838 kb on + strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
629,114 + +1.7
629,114 + +0.4
629,114 + -1.0
629,114 + +1.1
629,115 - -1.8
629,115 - -3.6
629,115 - +0.6
629,115 - +1.1
629,122 - +0.6
629,225 + +0.6
629,226 - -0.3
629,242 - +0.3
629,308 + -0.3
629,309 - +0.8
629,309 - -2.3
629,309 - -2.4
629,316 + -0.2
629,316 + +1.1
629,317 - +1.4
629,361 - +0.7
629,416 + +0.0
629,416 + +1.0
629,417 - -0.7
629,417 - -3.2
629,417 - +0.5
629,522 + Rru_A0534 0.17 -0.0
629,522 + Rru_A0534 0.17 +0.6
629,522 + Rru_A0534 0.17 -3.2
629,523 - Rru_A0534 0.17 +0.9
629,590 - Rru_A0534 0.30 -1.2
629,598 - Rru_A0534 0.32 -1.0
629,963 - +1.4
629,976 - +0.4
630,015 + -2.3
630,043 + -2.8
630,043 + -3.2
630,069 + -3.6
630,069 + -3.5
630,070 - +0.8
630,172 - Rru_A0535 0.11 +1.6
630,172 - Rru_A0535 0.11 +0.5
630,182 + Rru_A0535 0.12 -1.4
630,191 + Rru_A0535 0.13 +0.2
630,191 + Rru_A0535 0.13 +0.7
630,270 + Rru_A0535 0.22 +1.1
630,270 + Rru_A0535 0.22 +1.1
630,271 - Rru_A0535 0.22 +0.1
630,271 - Rru_A0535 0.22 -2.1
630,271 - Rru_A0535 0.22 -3.0
630,309 + Rru_A0535 0.26 -1.8
630,309 + Rru_A0535 0.26 +0.4
630,310 - Rru_A0535 0.26 -0.3
630,327 + Rru_A0535 0.28 +0.4
630,328 - Rru_A0535 0.28 +1.0
630,328 - Rru_A0535 0.28 +0.1
630,486 + Rru_A0535 0.46 -0.8
630,486 + Rru_A0535 0.46 +0.8
630,486 + Rru_A0535 0.46 +0.8
630,486 + Rru_A0535 0.46 -1.6
630,486 + Rru_A0535 0.46 -0.0
630,486 + Rru_A0535 0.46 +0.5
630,486 + Rru_A0535 0.46 +0.0
630,486 + Rru_A0535 0.46 +0.6
630,487 - Rru_A0535 0.46 +0.1
630,487 - Rru_A0535 0.46 +0.0
630,705 + Rru_A0535 0.70 -3.2
630,705 + Rru_A0535 0.70 +1.5
630,705 + Rru_A0535 0.70 +0.2
630,706 - Rru_A0535 0.70 -4.4
630,706 - Rru_A0535 0.70 +0.5
630,706 - Rru_A0535 0.70 +0.8
630,720 + Rru_A0535 0.71 +1.0
630,720 + Rru_A0535 0.71 +1.3
630,720 + Rru_A0535 0.71 -0.4
630,721 - Rru_A0535 0.71 -2.2
630,721 - Rru_A0535 0.71 +1.0
630,721 - Rru_A0535 0.71 -1.1
630,721 - Rru_A0535 0.71 -2.9
630,721 - Rru_A0535 0.71 +0.3
630,947 + -0.8
630,947 + +2.7
630,948 - -1.9
630,948 - -4.3
631,004 + -0.1
631,083 + -0.1
631,083 + -1.0
631,083 + +0.7
631,084 - -0.7
631,219 - Rru_A0536 0.11 -0.4
631,270 + Rru_A0536 0.17 +0.0
631,271 - Rru_A0536 0.17 -1.2
631,271 - Rru_A0536 0.17 +0.5
631,283 + Rru_A0536 0.18 -1.9
631,283 + Rru_A0536 0.18 -1.9
631,283 + Rru_A0536 0.18 -1.2
631,284 - Rru_A0536 0.18 +0.7
631,284 - Rru_A0536 0.18 -2.5
631,284 - Rru_A0536 0.18 -2.1
631,284 - Rru_A0536 0.18 -3.0
631,430 + Rru_A0536 0.34 -0.7
631,430 + Rru_A0536 0.34 -0.1
631,430 + Rru_A0536 0.34 -2.3
631,431 - Rru_A0536 0.34 +0.5
631,432 + Rru_A0536 0.34 +1.4
631,628 + Rru_A0536 0.56 +0.7
631,628 + Rru_A0536 0.56 -2.1
631,628 + Rru_A0536 0.56 -0.4
631,629 - Rru_A0536 0.56 -2.4
631,629 - Rru_A0536 0.56 -1.7
631,630 + Rru_A0536 0.56 +0.9
631,630 + Rru_A0536 0.56 +1.0
631,631 - Rru_A0536 0.56 -0.9
631,631 - Rru_A0536 0.56 -1.2
631,838 + Rru_A0536 0.79 -4.3
631,838 + Rru_A0536 0.79 -0.6
631,839 - Rru_A0536 0.79 -0.1
631,839 - Rru_A0536 0.79 +1.0
631,839 - Rru_A0536 0.79 +0.4
631,839 - Rru_A0536 0.79 +2.1
631,839 - Rru_A0536 0.79 -1.7
631,839 - Rru_A0536 0.79 +0.3
631,839 - Rru_A0536 0.79 +0.2
631,839 - Rru_A0536 0.79 -1.7

Or see this region's nucleotide sequence