Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0494

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0493 and Rru_A0494 are separated by 4 nucleotidesRru_A0494 and Rru_A0495 are separated by 6 nucleotidesRru_A0495 and Rru_A0496 are separated by 127 nucleotidesRru_A0496 and Rru_A0497 are separated by 45 nucleotides Rru_A0493: Rru_A0493 - Phytoene desaturase (NCBI), at 578,808 to 580,331 _A0493 Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364 _A0494 Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706 _A0495 Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223 _A0496 Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369 _A0497 Position (kb) 580 581 582Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 579.450 kb on + strand, within Rru_A0493at 579.451 kb on - strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.569 kb on + strand, within Rru_A0493at 579.753 kb on + strand, within Rru_A0493at 579.798 kb on + strand, within Rru_A0493at 579.799 kb on - strand, within Rru_A0493at 579.900 kb on + strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.961 kb on - strand, within Rru_A0493at 579.961 kb on - strand, within Rru_A0493at 580.024 kb on - strand, within Rru_A0493at 580.202 kb on + strandat 580.227 kb on + strandat 580.227 kb on + strandat 580.227 kb on + strandat 580.298 kb on + strandat 580.329 kb on + strandat 580.330 kb on - strandat 580.330 kb on - strandat 580.360 kb on + strandat 580.361 kb on - strandat 580.361 kb on - strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.367 kb on - strandat 580.367 kb on - strandat 580.367 kb on - strandat 580.459 kb on + strand, within Rru_A0494at 580.553 kb on - strand, within Rru_A0494at 580.599 kb on + strand, within Rru_A0494at 580.599 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 581.065 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.412 kb on + strand, within Rru_A0495at 581.466 kb on - strand, within Rru_A0495at 581.527 kb on - strand, within Rru_A0495at 581.587 kb on + strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.590 kb on - strand, within Rru_A0495at 581.704 kb on + strandat 581.704 kb on + strandat 581.757 kb on + strandat 581.762 kb on + strandat 581.762 kb on + strandat 581.763 kb on - strandat 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 582.222 kb on - strandat 582.222 kb on - strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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579,450 + Rru_A0493 0.42 -3.0
579,451 - Rru_A0493 0.42 -0.6
579,512 + Rru_A0493 0.46 -2.7
579,512 + Rru_A0493 0.46 -2.2
579,512 + Rru_A0493 0.46 -0.7
579,512 + Rru_A0493 0.46 -1.1
579,512 + Rru_A0493 0.46 -3.2
579,512 + Rru_A0493 0.46 +1.3
579,513 - Rru_A0493 0.46 +0.1
579,513 - Rru_A0493 0.46 -2.9
579,513 - Rru_A0493 0.46 -2.7
579,513 - Rru_A0493 0.46 -2.3
579,568 - Rru_A0493 0.50 -3.7
579,568 - Rru_A0493 0.50 -2.7
579,569 + Rru_A0493 0.50 -2.0
579,753 + Rru_A0493 0.62 -3.7
579,798 + Rru_A0493 0.65 -2.7
579,799 - Rru_A0493 0.65 -1.5
579,900 + Rru_A0493 0.72 -1.3
579,901 - Rru_A0493 0.72 -2.1
579,901 - Rru_A0493 0.72 -2.7
579,901 - Rru_A0493 0.72 -2.4
579,901 - Rru_A0493 0.72 -2.4
579,901 - Rru_A0493 0.72 -1.8
579,901 - Rru_A0493 0.72 -0.1
579,901 - Rru_A0493 0.72 -4.4
579,960 + Rru_A0493 0.76 -2.2
579,960 + Rru_A0493 0.76 +0.3
579,960 + Rru_A0493 0.76 -2.2
579,960 + Rru_A0493 0.76 -3.4
579,960 + Rru_A0493 0.76 -2.3
579,961 - Rru_A0493 0.76 -3.4
579,961 - Rru_A0493 0.76 -3.6
580,024 - Rru_A0493 0.80 -0.9
580,202 + -1.1
580,227 + -0.7
580,227 + -2.9
580,227 + -4.7
580,298 + -0.4
580,329 + -1.0
580,330 - -1.7
580,330 - -2.3
580,360 + -3.6
580,361 - -2.7
580,361 - -4.5
580,366 + -2.4
580,366 + -1.8
580,366 + -1.4
580,366 + -2.2
580,366 + -2.5
580,366 + -2.3
580,367 - -0.0
580,367 - -1.5
580,367 - -3.8
580,459 + Rru_A0494 0.12 -4.6
580,553 - Rru_A0494 0.21 -2.8
580,599 + Rru_A0494 0.26 -4.3
580,599 + Rru_A0494 0.26 -1.0
580,867 + Rru_A0494 0.52 -2.1
580,867 + Rru_A0494 0.52 -3.7
580,868 - Rru_A0494 0.52 +1.3
580,868 - Rru_A0494 0.52 -1.9
580,868 - Rru_A0494 0.52 -3.9
580,990 + Rru_A0494 0.64 -2.0
580,990 + Rru_A0494 0.64 -3.3
580,990 + Rru_A0494 0.64 -4.3
580,991 - Rru_A0494 0.64 -1.7
580,991 - Rru_A0494 0.64 -4.4
581,065 + Rru_A0494 0.71 +2.7
581,200 + Rru_A0494 0.84 -3.7
581,200 + Rru_A0494 0.84 +1.1
581,201 - Rru_A0494 0.84 +0.3
581,201 - Rru_A0494 0.84 -4.3
581,201 - Rru_A0494 0.84 -1.5
581,412 + Rru_A0495 0.12 -2.4
581,466 - Rru_A0495 0.28 +1.1
581,527 - Rru_A0495 0.46 -0.8
581,587 + Rru_A0495 0.64 -3.4
581,588 - Rru_A0495 0.65 -1.5
581,588 - Rru_A0495 0.65 -0.2
581,590 - Rru_A0495 0.65 -2.7
581,704 + -0.8
581,704 + +0.4
581,757 + +0.3
581,762 + +1.1
581,762 + +1.0
581,763 - -3.3
581,934 - Rru_A0496 0.26 +0.5
581,934 - Rru_A0496 0.26 -1.1
581,934 - Rru_A0496 0.26 -1.5
582,222 - -2.7
582,222 - -0.2
582,270 + +1.3
582,270 + -4.4
582,270 + -1.0
582,270 + +0.7
582,270 + -0.3
582,271 - -1.6
582,271 - -2.2
582,271 - -0.1
582,271 - -1.7
582,291 - +0.1

Or see this region's nucleotide sequence