Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0470

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0469 and Rru_A0470 are separated by 781 nucleotidesRru_A0470 and Rru_A0471 are separated by 151 nucleotides Rru_A0469: Rru_A0469 - Ketol-acid reductoisomerase (NCBI), at 550,038 to 551,057 _A0469 Rru_A0470: Rru_A0470 - Cell shape determining protein MreB/Mrl (NCBI), at 551,839 to 552,867 _A0470 Rru_A0471: Rru_A0471 - Rod shape-determining protein MreC, subtype (NCBI), at 553,019 to 553,876 _A0471 Position (kb) 551 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1at 551.108 kb on + strandat 551.109 kb on - strandat 551.109 kb on - strandat 551.488 kb on + strandat 551.488 kb on + strandat 551.737 kb on + strandat 552.862 kb on + strandat 552.862 kb on + strandat 552.862 kb on + strandat 552.862 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
551,108 + +0.1
551,109 - -2.9
551,109 - -0.8
551,488 + +0.4
551,488 + -0.0
551,737 + -2.0
552,862 + -1.3
552,862 + -1.3
552,862 + +0.7
552,862 + -0.6

Or see this region's nucleotide sequence