Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0447

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0445 and Rru_A0446 are separated by 186 nucleotidesRru_A0446 and Rru_A0447 are separated by 13 nucleotidesRru_A0447 and Rru_A0448 are separated by 9 nucleotides Rru_A0445: Rru_A0445 - 3(2),5 -bisphosphate nucleotidase (NCBI), at 523,939 to 524,721 _A0445 Rru_A0446: Rru_A0446 - hypothetical protein (NCBI), at 524,908 to 525,354 _A0446 Rru_A0447: Rru_A0447 - AMMECR1 (NCBI), at 525,368 to 526,132 _A0447 Rru_A0448: Rru_A0448 - Protein of unknown function DUF52 (NCBI), at 526,142 to 526,990 _A0448 Position (kb) 525 526 527Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 524.928 kb on - strandat 524.928 kb on - strandat 524.970 kb on + strand, within Rru_A0446at 524.970 kb on + strand, within Rru_A0446at 524.970 kb on + strand, within Rru_A0446at 524.970 kb on + strand, within Rru_A0446at 524.971 kb on - strand, within Rru_A0446at 524.971 kb on - strand, within Rru_A0446at 524.971 kb on - strand, within Rru_A0446at 524.999 kb on + strand, within Rru_A0446at 524.999 kb on + strand, within Rru_A0446at 525.045 kb on - strand, within Rru_A0446at 525.062 kb on + strand, within Rru_A0446at 525.062 kb on + strand, within Rru_A0446at 525.063 kb on - strand, within Rru_A0446at 525.063 kb on - strand, within Rru_A0446at 525.063 kb on - strand, within Rru_A0446at 525.063 kb on - strand, within Rru_A0446at 525.454 kb on - strand, within Rru_A0447at 525.454 kb on - strand, within Rru_A0447at 525.454 kb on - strand, within Rru_A0447at 525.475 kb on + strand, within Rru_A0447at 525.475 kb on + strand, within Rru_A0447at 525.476 kb on - strand, within Rru_A0447at 525.481 kb on + strand, within Rru_A0447at 525.481 kb on + strand, within Rru_A0447at 525.481 kb on + strand, within Rru_A0447at 525.482 kb on - strand, within Rru_A0447at 525.482 kb on - strand, within Rru_A0447at 526.167 kb on + strandat 526.168 kb on - strandat 526.216 kb on + strandat 526.389 kb on + strand, within Rru_A0448at 526.389 kb on + strand, within Rru_A0448at 526.389 kb on + strand, within Rru_A0448at 526.390 kb on - strand, within Rru_A0448at 526.390 kb on - strand, within Rru_A0448at 526.665 kb on + strand, within Rru_A0448at 526.665 kb on + strand, within Rru_A0448at 526.666 kb on - strand, within Rru_A0448at 526.666 kb on - strand, within Rru_A0448at 526.797 kb on + strand, within Rru_A0448at 526.914 kb on + strandat 527.020 kb on + strandat 527.099 kb on - strandat 527.099 kb on - strandat 527.123 kb on + strandat 527.123 kb on + strandat 527.124 kb on - strandat 527.124 kb on - strandat 527.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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524,928 - -5.1
524,928 - +1.1
524,970 + Rru_A0446 0.14 -1.0
524,970 + Rru_A0446 0.14 +0.9
524,970 + Rru_A0446 0.14 -3.0
524,970 + Rru_A0446 0.14 -2.3
524,971 - Rru_A0446 0.14 +0.7
524,971 - Rru_A0446 0.14 +0.8
524,971 - Rru_A0446 0.14 -0.7
524,999 + Rru_A0446 0.20 +0.2
524,999 + Rru_A0446 0.20 +0.8
525,045 - Rru_A0446 0.31 +0.6
525,062 + Rru_A0446 0.34 -1.1
525,062 + Rru_A0446 0.34 -0.2
525,063 - Rru_A0446 0.35 +0.9
525,063 - Rru_A0446 0.35 +0.4
525,063 - Rru_A0446 0.35 +0.4
525,063 - Rru_A0446 0.35 -3.2
525,454 - Rru_A0447 0.11 +1.5
525,454 - Rru_A0447 0.11 -0.7
525,454 - Rru_A0447 0.11 -0.4
525,475 + Rru_A0447 0.14 -0.8
525,475 + Rru_A0447 0.14 +0.2
525,476 - Rru_A0447 0.14 +0.9
525,481 + Rru_A0447 0.15 -4.0
525,481 + Rru_A0447 0.15 -1.2
525,481 + Rru_A0447 0.15 -0.6
525,482 - Rru_A0447 0.15 -0.0
525,482 - Rru_A0447 0.15 -0.3
526,167 + -0.2
526,168 - -0.0
526,216 + +1.0
526,389 + Rru_A0448 0.29 +1.2
526,389 + Rru_A0448 0.29 -0.4
526,389 + Rru_A0448 0.29 +0.1
526,390 - Rru_A0448 0.29 +2.6
526,390 - Rru_A0448 0.29 +0.9
526,665 + Rru_A0448 0.62 -3.2
526,665 + Rru_A0448 0.62 -3.9
526,666 - Rru_A0448 0.62 -0.7
526,666 - Rru_A0448 0.62 -1.7
526,797 + Rru_A0448 0.77 -2.4
526,914 + -2.8
527,020 + -2.8
527,099 - +0.0
527,099 - +1.1
527,123 + -0.1
527,123 + +2.1
527,124 - -0.2
527,124 - -2.4
527,124 - +0.2

Or see this region's nucleotide sequence