Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0422 and Rru_A0423 are separated by 162 nucleotides Rru_A0423 and Rru_A0424 are separated by 28 nucleotides Rru_A0424 and Rru_A0425 are separated by 100 nucleotides Rru_A0425 and Rru_A0426 are separated by 148 nucleotides
Rru_A0422: Rru_A0422 - hypothetical protein (NCBI), at 497,171 to 497,557
_A0422
Rru_A0423: Rru_A0423 - hypothetical protein (NCBI), at 497,720 to 498,124
_A0423
Rru_A0424: Rru_A0424 - hypothetical protein (NCBI), at 498,153 to 498,377
_A0424
Rru_A0425: Rru_A0425 - hypothetical protein (NCBI), at 498,478 to 498,828
_A0425
Rru_A0426: Rru_A0426 - hypothetical protein (NCBI), at 498,977 to 499,318
_A0426
Position (kb) 498
499 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 497.361 kb on + strand, within Rru_A0422 at 497.361 kb on + strand, within Rru_A0422 at 497.362 kb on - strand, within Rru_A0422 at 497.362 kb on - strand, within Rru_A0422 at 497.603 kb on + strand at 497.665 kb on + strand at 497.666 kb on - strand at 497.671 kb on + strand at 497.736 kb on + strand at 497.742 kb on + strand at 497.743 kb on - strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.094 kb on - strand at 498.094 kb on - strand at 498.161 kb on - strand at 498.197 kb on - strand, within Rru_A0424 at 498.331 kb on - strand, within Rru_A0424 at 498.381 kb on + strand at 498.381 kb on + strand at 498.381 kb on + strand at 498.381 kb on + strand at 498.382 kb on - strand at 498.382 kb on - strand at 498.386 kb on + strand at 498.387 kb on - strand at 498.479 kb on + strand at 498.479 kb on + strand at 498.480 kb on - strand at 498.480 kb on - strand at 498.480 kb on - strand at 498.846 kb on - strand at 498.851 kb on + strand at 498.851 kb on + strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.914 kb on + strand at 498.978 kb on + strand at 498.979 kb on - strand at 498.979 kb on - strand at 499.063 kb on + strand, within Rru_A0426 at 499.063 kb on + strand, within Rru_A0426 at 499.063 kb on + strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.340 kb on + strand at 499.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 497,361 + Rru_A0422 0.49 +0.5 497,361 + Rru_A0422 0.49 +0.1 497,362 - Rru_A0422 0.49 -2.4 497,362 - Rru_A0422 0.49 -2.8 497,603 + -2.5 497,665 + -1.3 497,666 - +0.6 497,671 + +1.2 497,736 + -2.3 497,742 + +0.3 497,743 - -2.0 498,093 + -1.4 498,093 + -0.6 498,093 + +0.8 498,093 + -0.2 498,094 - +0.4 498,094 - +1.1 498,161 - +1.0 498,197 - Rru_A0424 0.20 -3.6 498,331 - Rru_A0424 0.79 +2.1 498,381 + -0.5 498,381 + -2.9 498,381 + -1.2 498,381 + -3.3 498,382 - -1.2 498,382 - -0.3 498,386 + -0.3 498,387 - -0.3 498,479 + -0.0 498,479 + +1.3 498,480 - +0.4 498,480 - +1.4 498,480 - -0.8 498,846 - -0.7 498,851 + -4.8 498,851 + +0.5 498,852 - -1.7 498,852 - +0.2 498,852 - -2.0 498,852 - -0.9 498,914 + +1.3 498,978 + -3.1 498,979 - +0.2 498,979 - +0.5 499,063 + Rru_A0426 0.25 -0.2 499,063 + Rru_A0426 0.25 -0.1 499,063 + Rru_A0426 0.25 +0.9 499,064 - Rru_A0426 0.25 -0.5 499,064 - Rru_A0426 0.25 -1.5 499,064 - Rru_A0426 0.25 -2.6 499,065 + Rru_A0426 0.26 -1.3 499,065 + Rru_A0426 0.26 -1.3 499,065 + Rru_A0426 0.26 -3.7 499,065 + Rru_A0426 0.26 +0.4 499,066 - Rru_A0426 0.26 -2.9 499,066 - Rru_A0426 0.26 -1.0 499,066 - Rru_A0426 0.26 -1.2 499,066 - Rru_A0426 0.26 +0.6 499,340 + -4.2 499,340 + +0.2
Or see this region's nucleotide sequence