Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0418 and Rru_A0419 are separated by 29 nucleotides Rru_A0419 and Rru_A0420 are separated by 18 nucleotides Rru_A0420 and Rru_A0421 are separated by 155 nucleotides Rru_A0421 and Rru_A0422 are separated by 95 nucleotides
Rru_A0418: Rru_A0418 - Beta-ketoacyl synthase (NCBI), at 493,901 to 495,163
_A0418
Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179
_A0419
Rru_A0420: Rru_A0420 - hypothetical protein (NCBI), at 496,198 to 496,593
_A0420
Rru_A0421: Rru_A0421 - hypothetical protein (NCBI), at 496,749 to 497,075
_A0421
Rru_A0422: Rru_A0422 - hypothetical protein (NCBI), at 497,171 to 497,557
_A0422
Position (kb) 495
496
497 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 495.187 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.640 kb on + strand, within Rru_A0419 at 495.640 kb on + strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.646 kb on + strand, within Rru_A0419 at 495.646 kb on + strand, within Rru_A0419 at 495.647 kb on - strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.199 kb on + strand at 496.200 kb on - strand at 496.456 kb on - strand, within Rru_A0420 at 496.657 kb on - strand at 496.750 kb on + strand at 496.979 kb on + strand, within Rru_A0421 at 497.008 kb on + strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 495,187 - -0.3 495,257 - -1.3 495,257 - +2.2 495,257 - -1.5 495,257 - -2.1 495,262 + -2.8 495,262 + +1.0 495,262 + -1.3 495,262 + +0.7 495,262 + -0.2 495,262 + -1.8 495,262 + -3.4 495,263 - -0.4 495,263 - -0.1 495,263 - -1.3 495,263 - +1.8 495,640 + Rru_A0419 0.45 +0.0 495,640 + Rru_A0419 0.45 -3.7 495,641 - Rru_A0419 0.45 +1.0 495,641 - Rru_A0419 0.45 -1.8 495,641 - Rru_A0419 0.45 +2.5 495,641 - Rru_A0419 0.45 -1.6 495,642 + Rru_A0419 0.45 -1.7 495,642 + Rru_A0419 0.45 +1.0 495,642 + Rru_A0419 0.45 +1.6 495,642 + Rru_A0419 0.45 -0.3 495,643 - Rru_A0419 0.46 +0.1 495,643 - Rru_A0419 0.46 -3.6 495,643 - Rru_A0419 0.46 -3.0 495,646 + Rru_A0419 0.46 -2.1 495,646 + Rru_A0419 0.46 -3.6 495,647 - Rru_A0419 0.46 -3.9 495,892 + Rru_A0419 0.71 -0.2 495,892 + Rru_A0419 0.71 -2.2 495,892 + Rru_A0419 0.71 -1.7 495,892 + Rru_A0419 0.71 -2.8 495,892 + Rru_A0419 0.71 -0.6 495,892 + Rru_A0419 0.71 -1.5 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 -2.3 495,893 - Rru_A0419 0.71 -3.5 495,893 - Rru_A0419 0.71 -0.4 495,893 - Rru_A0419 0.71 +1.0 495,893 - Rru_A0419 0.71 +0.5 495,973 + Rru_A0419 0.79 +2.3 495,973 + Rru_A0419 0.79 +0.7 495,973 + Rru_A0419 0.79 +0.3 495,973 + Rru_A0419 0.79 -1.7 495,973 + Rru_A0419 0.79 -5.4 495,973 + Rru_A0419 0.79 +0.5 495,973 + Rru_A0419 0.79 +0.6 495,973 + Rru_A0419 0.79 +0.0 495,974 - Rru_A0419 0.79 -0.1 495,974 - Rru_A0419 0.79 +0.4 495,974 - Rru_A0419 0.79 -0.8 495,974 - Rru_A0419 0.79 -0.9 495,974 - Rru_A0419 0.79 -0.8 496,066 + Rru_A0419 0.88 -3.6 496,066 + Rru_A0419 0.88 -3.2 496,066 + Rru_A0419 0.88 -4.1 496,066 + Rru_A0419 0.88 +0.4 496,067 - Rru_A0419 0.89 +0.4 496,067 - Rru_A0419 0.89 -2.3 496,067 - Rru_A0419 0.89 +1.7 496,199 + -4.2 496,200 - +0.1 496,456 - Rru_A0420 0.65 -3.3 496,657 - -3.4 496,750 + +0.9 496,979 + Rru_A0421 0.70 -0.2 497,008 + Rru_A0421 0.79 +0.4 497,009 - Rru_A0421 0.80 -0.5 497,009 - Rru_A0421 0.80 -3.0 497,112 - -1.2
Or see this region's nucleotide sequence