Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0375

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0374 and Rru_A0375 are separated by 114 nucleotidesRru_A0375 and Rru_A0376 are separated by 27 nucleotidesRru_A0376 and Rru_A0377 overlap by 4 nucleotides Rru_A0374: Rru_A0374 - hypothetical protein (NCBI), at 450,804 to 451,733 _A0374 Rru_A0375: Rru_A0375 - Pirin-like (NCBI), at 451,848 to 452,543 _A0375 Rru_A0376: Rru_A0376 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 452,571 to 453,287 _A0376 Rru_A0377: Rru_A0377 - Signal Transduction Histidine Kinase (STHK), LytS (NCBI), at 453,284 to 455,014 _A0377 Position (kb) 451 452 453Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 451.119 kb on + strand, within Rru_A0374at 451.119 kb on + strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.141 kb on - strand, within Rru_A0374at 451.317 kb on + strand, within Rru_A0374at 451.318 kb on - strand, within Rru_A0374at 451.318 kb on - strand, within Rru_A0374at 451.341 kb on + strand, within Rru_A0374at 451.342 kb on - strand, within Rru_A0374at 451.343 kb on + strand, within Rru_A0374at 451.344 kb on - strand, within Rru_A0374at 451.344 kb on - strand, within Rru_A0374at 451.374 kb on + strand, within Rru_A0374at 451.375 kb on - strand, within Rru_A0374at 451.516 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.591 kb on - strand, within Rru_A0374at 451.645 kb on - strandat 451.645 kb on - strandat 451.645 kb on - strandat 451.648 kb on - strandat 451.666 kb on + strandat 451.667 kb on - strandat 451.832 kb on + strandat 451.835 kb on - strandat 451.935 kb on + strand, within Rru_A0375at 451.935 kb on + strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.047 kb on - strand, within Rru_A0375at 452.047 kb on - strand, within Rru_A0375at 452.157 kb on + strand, within Rru_A0375at 452.158 kb on - strand, within Rru_A0375at 452.158 kb on - strand, within Rru_A0375at 452.177 kb on + strand, within Rru_A0375at 452.178 kb on - strand, within Rru_A0375at 452.178 kb on - strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.405 kb on + strand, within Rru_A0375at 452.406 kb on - strand, within Rru_A0375at 452.541 kb on + strandat 452.710 kb on + strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.998 kb on + strand, within Rru_A0376at 452.999 kb on - strand, within Rru_A0376at 452.999 kb on - strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.035 kb on - strand, within Rru_A0376at 453.035 kb on - strand, within Rru_A0376at 453.043 kb on + strand, within Rru_A0376at 453.129 kb on - strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.399 kb on + strandat 453.399 kb on + strandat 453.400 kb on - strandat 453.478 kb on - strand, within Rru_A0377at 453.478 kb on - strand, within Rru_A0377

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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450,948 + Rru_A0374 0.15 -4.8
450,948 + Rru_A0374 0.15 +0.2
450,948 + Rru_A0374 0.15 +0.6
450,957 + Rru_A0374 0.16 +0.8
450,957 + Rru_A0374 0.16 -0.6
450,957 + Rru_A0374 0.16 +0.5
450,957 + Rru_A0374 0.16 -2.5
450,957 + Rru_A0374 0.16 +1.2
450,958 - Rru_A0374 0.17 +1.0
450,958 - Rru_A0374 0.17 +0.2
451,119 + Rru_A0374 0.34 +0.2
451,119 + Rru_A0374 0.34 +0.9
451,120 - Rru_A0374 0.34 -2.5
451,120 - Rru_A0374 0.34 +1.1
451,120 - Rru_A0374 0.34 +0.1
451,141 - Rru_A0374 0.36 -3.7
451,317 + Rru_A0374 0.55 -4.3
451,318 - Rru_A0374 0.55 -2.5
451,318 - Rru_A0374 0.55 -0.6
451,341 + Rru_A0374 0.58 +0.9
451,342 - Rru_A0374 0.58 +1.1
451,343 + Rru_A0374 0.58 +1.2
451,344 - Rru_A0374 0.58 -2.1
451,344 - Rru_A0374 0.58 +1.5
451,374 + Rru_A0374 0.61 -2.1
451,375 - Rru_A0374 0.61 +1.3
451,516 - Rru_A0374 0.77 +1.6
451,576 - Rru_A0374 0.83 -3.7
451,576 - Rru_A0374 0.83 -0.2
451,591 - Rru_A0374 0.85 -0.1
451,645 - -0.3
451,645 - +0.3
451,645 - -0.2
451,648 - +0.1
451,666 + -2.7
451,667 - +1.6
451,832 + -1.9
451,835 - +2.3
451,935 + Rru_A0375 0.12 -1.4
451,935 + Rru_A0375 0.12 +0.8
451,936 - Rru_A0375 0.13 -2.1
451,936 - Rru_A0375 0.13 +0.7
451,936 - Rru_A0375 0.13 +1.8
451,936 - Rru_A0375 0.13 -1.3
451,936 - Rru_A0375 0.13 +0.4
452,046 + Rru_A0375 0.28 -0.4
452,046 + Rru_A0375 0.28 -1.7
452,046 + Rru_A0375 0.28 +0.7
452,046 + Rru_A0375 0.28 +2.8
452,046 + Rru_A0375 0.28 +0.3
452,046 + Rru_A0375 0.28 -3.8
452,047 - Rru_A0375 0.29 +0.3
452,047 - Rru_A0375 0.29 +2.4
452,157 + Rru_A0375 0.44 +0.2
452,158 - Rru_A0375 0.45 -0.8
452,158 - Rru_A0375 0.45 +0.4
452,177 + Rru_A0375 0.47 -3.1
452,178 - Rru_A0375 0.47 +0.8
452,178 - Rru_A0375 0.47 -1.5
452,403 + Rru_A0375 0.80 -0.5
452,403 + Rru_A0375 0.80 +0.7
452,403 + Rru_A0375 0.80 -2.1
452,403 + Rru_A0375 0.80 -0.0
452,403 + Rru_A0375 0.80 +1.2
452,404 - Rru_A0375 0.80 -4.0
452,404 - Rru_A0375 0.80 +0.9
452,404 - Rru_A0375 0.80 +2.1
452,404 - Rru_A0375 0.80 -1.4
452,405 + Rru_A0375 0.80 +0.8
452,406 - Rru_A0375 0.80 +0.1
452,541 + +1.1
452,710 + Rru_A0376 0.19 +0.6
452,711 - Rru_A0376 0.20 -2.4
452,711 - Rru_A0376 0.20 -2.7
452,711 - Rru_A0376 0.20 +0.1
452,711 - Rru_A0376 0.20 -1.9
452,803 + Rru_A0376 0.32 -0.0
452,803 + Rru_A0376 0.32 -0.9
452,803 + Rru_A0376 0.32 -1.3
452,803 + Rru_A0376 0.32 -0.0
452,803 + Rru_A0376 0.32 +0.6
452,804 - Rru_A0376 0.32 -3.7
452,804 - Rru_A0376 0.32 -4.6
452,804 - Rru_A0376 0.32 -1.2
452,804 - Rru_A0376 0.32 +1.2
452,804 - Rru_A0376 0.32 +0.4
452,804 - Rru_A0376 0.32 +0.2
452,804 - Rru_A0376 0.32 -1.6
452,998 + Rru_A0376 0.60 +1.7
452,999 - Rru_A0376 0.60 -1.3
452,999 - Rru_A0376 0.60 -2.6
453,034 + Rru_A0376 0.65 -3.6
453,034 + Rru_A0376 0.65 +0.4
453,034 + Rru_A0376 0.65 -0.0
453,034 + Rru_A0376 0.65 -0.3
453,035 - Rru_A0376 0.65 +0.1
453,035 - Rru_A0376 0.65 -0.2
453,043 + Rru_A0376 0.66 +0.5
453,129 - Rru_A0376 0.78 -3.5
453,132 + Rru_A0376 0.78 +0.3
453,132 + Rru_A0376 0.78 -0.5
453,132 + Rru_A0376 0.78 +0.7
453,132 + Rru_A0376 0.78 -0.6
453,132 + Rru_A0376 0.78 +1.9
453,133 - Rru_A0376 0.78 -4.0
453,133 - Rru_A0376 0.78 -0.1
453,133 - Rru_A0376 0.78 -1.3
453,133 - Rru_A0376 0.78 +1.0
453,399 + +0.1
453,399 + -1.2
453,400 - +2.2
453,478 - Rru_A0377 0.11 +0.4
453,478 - Rru_A0377 0.11 -0.3

Or see this region's nucleotide sequence