Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0373

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0372 and Rru_A0373 are separated by 131 nucleotidesRru_A0373 and Rru_A0374 are separated by 49 nucleotides Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014 _A0372 Rru_A0373: Rru_A0373 - flavodoxin/nitric oxide synthase (NCBI), at 450,146 to 450,754 _A0373 Rru_A0374: Rru_A0374 - hypothetical protein (NCBI), at 450,804 to 451,733 _A0374 Position (kb) 450 451Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 449.402 kb on + strand, within Rru_A0372at 449.402 kb on + strand, within Rru_A0372at 449.682 kb on + strand, within Rru_A0372at 449.682 kb on + strand, within Rru_A0372at 449.682 kb on + strand, within Rru_A0372at 449.683 kb on - strand, within Rru_A0372at 449.685 kb on - strand, within Rru_A0372at 450.062 kb on + strandat 450.062 kb on + strandat 450.101 kb on + strandat 450.102 kb on - strandat 450.109 kb on + strandat 450.109 kb on + strandat 450.109 kb on + strandat 450.110 kb on - strandat 450.110 kb on - strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.177 kb on - strandat 450.179 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.362 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.539 kb on + strand, within Rru_A0373at 450.540 kb on - strand, within Rru_A0373at 450.540 kb on - strand, within Rru_A0373at 450.843 kb on + strandat 450.843 kb on + strandat 450.844 kb on - strandat 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 451.119 kb on + strand, within Rru_A0374at 451.119 kb on + strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.120 kb on - strand, within Rru_A0374at 451.141 kb on - strand, within Rru_A0374at 451.317 kb on + strand, within Rru_A0374at 451.318 kb on - strand, within Rru_A0374at 451.318 kb on - strand, within Rru_A0374at 451.341 kb on + strand, within Rru_A0374at 451.342 kb on - strand, within Rru_A0374at 451.343 kb on + strand, within Rru_A0374at 451.344 kb on - strand, within Rru_A0374at 451.344 kb on - strand, within Rru_A0374at 451.374 kb on + strand, within Rru_A0374at 451.375 kb on - strand, within Rru_A0374at 451.516 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.591 kb on - strand, within Rru_A0374at 451.645 kb on - strandat 451.645 kb on - strandat 451.645 kb on - strandat 451.648 kb on - strandat 451.666 kb on + strandat 451.667 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
449,402 + Rru_A0372 0.70 -2.1
449,402 + Rru_A0372 0.70 -2.8
449,682 + Rru_A0372 0.84 -1.6
449,682 + Rru_A0372 0.84 -0.3
449,682 + Rru_A0372 0.84 +0.4
449,683 - Rru_A0372 0.84 -3.5
449,685 - Rru_A0372 0.84 -2.0
450,062 + -3.6
450,062 + -1.3
450,101 + -0.0
450,102 - -2.9
450,109 + -3.2
450,109 + -3.2
450,109 + +1.0
450,110 - -0.7
450,110 - -0.6
450,176 + +0.8
450,176 + -2.5
450,176 + -0.3
450,176 + +0.5
450,176 + +0.6
450,177 - -0.4
450,179 + +0.9
450,188 + -3.7
450,188 + +0.5
450,188 + +1.2
450,188 + +0.2
450,189 - -5.3
450,189 - -2.6
450,189 - +0.8
450,189 - -0.9
450,280 + Rru_A0373 0.22 -3.1
450,280 + Rru_A0373 0.22 +1.7
450,280 + Rru_A0373 0.22 +0.3
450,280 + Rru_A0373 0.22 -0.4
450,280 + Rru_A0373 0.22 -2.0
450,280 + Rru_A0373 0.22 +3.0
450,280 + Rru_A0373 0.22 +0.6
450,281 - Rru_A0373 0.22 -0.6
450,281 - Rru_A0373 0.22 -1.4
450,281 - Rru_A0373 0.22 +0.3
450,362 + Rru_A0373 0.35 +0.9
450,403 + Rru_A0373 0.42 -0.2
450,403 + Rru_A0373 0.42 -1.2
450,403 + Rru_A0373 0.42 -2.5
450,403 + Rru_A0373 0.42 -3.5
450,404 - Rru_A0373 0.42 -2.0
450,404 - Rru_A0373 0.42 +0.2
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 -2.1
450,404 - Rru_A0373 0.42 -2.5
450,404 - Rru_A0373 0.42 -2.3
450,539 + Rru_A0373 0.65 +0.4
450,540 - Rru_A0373 0.65 +0.6
450,540 - Rru_A0373 0.65 +1.4
450,843 + +1.1
450,843 + -2.4
450,844 - -2.8
450,948 + Rru_A0374 0.15 -4.8
450,948 + Rru_A0374 0.15 +0.2
450,948 + Rru_A0374 0.15 +0.6
450,957 + Rru_A0374 0.16 +0.8
450,957 + Rru_A0374 0.16 -0.6
450,957 + Rru_A0374 0.16 +0.5
450,957 + Rru_A0374 0.16 -2.5
450,957 + Rru_A0374 0.16 +1.2
450,958 - Rru_A0374 0.17 +1.0
450,958 - Rru_A0374 0.17 +0.2
451,119 + Rru_A0374 0.34 +0.2
451,119 + Rru_A0374 0.34 +0.9
451,120 - Rru_A0374 0.34 -2.5
451,120 - Rru_A0374 0.34 +1.1
451,120 - Rru_A0374 0.34 +0.1
451,141 - Rru_A0374 0.36 -3.7
451,317 + Rru_A0374 0.55 -4.3
451,318 - Rru_A0374 0.55 -2.5
451,318 - Rru_A0374 0.55 -0.6
451,341 + Rru_A0374 0.58 +0.9
451,342 - Rru_A0374 0.58 +1.1
451,343 + Rru_A0374 0.58 +1.2
451,344 - Rru_A0374 0.58 -2.1
451,344 - Rru_A0374 0.58 +1.5
451,374 + Rru_A0374 0.61 -2.1
451,375 - Rru_A0374 0.61 +1.3
451,516 - Rru_A0374 0.77 +1.6
451,576 - Rru_A0374 0.83 -3.7
451,576 - Rru_A0374 0.83 -0.2
451,591 - Rru_A0374 0.85 -0.1
451,645 - -0.3
451,645 - +0.3
451,645 - -0.2
451,648 - +0.1
451,666 + -2.7
451,667 - +1.6

Or see this region's nucleotide sequence