Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0316

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0315 and Rru_A0316 are separated by 13 nucleotidesRru_A0316 and Rru_A0317 are separated by 2 nucleotidesRru_A0317 and Rru_A0318 are separated by 8 nucleotides Rru_A0315: Rru_A0315 - NADH dehydrogenase (quinone) (NCBI), at 383,654 to 385,678 _A0315 Rru_A0316: Rru_A0316 - NADH-ubiquinone oxidoreductase (NCBI), at 385,692 to 387,377 _A0316 Rru_A0317: Rru_A0317 - Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI), at 387,380 to 388,282 _A0317 Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818 _A0318 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 384.701 kb on + strand, within Rru_A0315at 384.702 kb on - strand, within Rru_A0315at 384.702 kb on - strand, within Rru_A0315at 384.916 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.433 kb on + strand, within Rru_A0315at 385.434 kb on - strand, within Rru_A0315at 385.434 kb on - strand, within Rru_A0315at 385.434 kb on - strand, within Rru_A0315at 385.445 kb on - strand, within Rru_A0315at 385.445 kb on - strand, within Rru_A0315at 385.541 kb on + strandat 385.542 kb on - strandat 385.542 kb on - strandat 385.597 kb on + strandat 385.597 kb on + strandat 385.616 kb on + strandat 385.616 kb on + strandat 385.617 kb on - strandat 385.617 kb on - strandat 385.783 kb on - strandat 385.783 kb on - strandat 385.824 kb on + strandat 385.825 kb on - strandat 385.825 kb on - strandat 385.825 kb on - strandat 385.825 kb on - strandat 385.896 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 386.034 kb on + strand, within Rru_A0316at 386.035 kb on - strand, within Rru_A0316at 386.035 kb on - strand, within Rru_A0316at 386.263 kb on - strand, within Rru_A0316at 386.263 kb on - strand, within Rru_A0316at 386.351 kb on + strand, within Rru_A0316at 386.352 kb on - strand, within Rru_A0316at 386.352 kb on - strand, within Rru_A0316at 386.364 kb on + strand, within Rru_A0316at 386.364 kb on + strand, within Rru_A0316at 386.364 kb on + strand, within Rru_A0316at 386.365 kb on - strand, within Rru_A0316at 386.365 kb on - strand, within Rru_A0316at 386.365 kb on - strand, within Rru_A0316at 386.366 kb on + strand, within Rru_A0316at 386.367 kb on - strand, within Rru_A0316at 386.430 kb on + strand, within Rru_A0316at 386.430 kb on + strand, within Rru_A0316at 386.431 kb on - strand, within Rru_A0316at 386.484 kb on + strand, within Rru_A0316at 386.485 kb on - strand, within Rru_A0316at 386.485 kb on - strand, within Rru_A0316at 386.556 kb on + strand, within Rru_A0316at 386.556 kb on + strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.649 kb on + strand, within Rru_A0316at 386.649 kb on + strand, within Rru_A0316at 386.650 kb on - strand, within Rru_A0316at 386.650 kb on - strand, within Rru_A0316at 387.088 kb on - strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.127 kb on - strand, within Rru_A0316at 387.127 kb on - strand, within Rru_A0316at 387.183 kb on + strand, within Rru_A0316at 387.184 kb on - strand, within Rru_A0316at 387.327 kb on + strandat 387.327 kb on + strandat 387.327 kb on + strandat 387.375 kb on + strandat 387.509 kb on + strand, within Rru_A0317at 387.509 kb on + strand, within Rru_A0317at 387.510 kb on - strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.715 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.746 kb on + strand, within Rru_A0317at 387.746 kb on + strand, within Rru_A0317at 387.777 kb on + strand, within Rru_A0317at 387.778 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 388.166 kb on - strand, within Rru_A0317at 388.352 kb on - strand, within Rru_A0318

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
384,701 + Rru_A0315 0.52 +0.3
384,702 - Rru_A0315 0.52 +0.9
384,702 - Rru_A0315 0.52 -0.0
384,916 + Rru_A0315 0.62 -3.8
385,007 + Rru_A0315 0.67 +1.1
385,007 + Rru_A0315 0.67 -0.2
385,007 + Rru_A0315 0.67 -1.2
385,007 + Rru_A0315 0.67 -1.1
385,007 + Rru_A0315 0.67 -0.6
385,008 - Rru_A0315 0.67 +1.0
385,008 - Rru_A0315 0.67 +0.5
385,008 - Rru_A0315 0.67 -1.5
385,008 - Rru_A0315 0.67 -2.7
385,433 + Rru_A0315 0.88 -1.8
385,434 - Rru_A0315 0.88 +0.5
385,434 - Rru_A0315 0.88 +0.5
385,434 - Rru_A0315 0.88 +0.7
385,445 - Rru_A0315 0.88 +0.7
385,445 - Rru_A0315 0.88 +1.4
385,541 + -1.2
385,542 - +0.3
385,542 - -0.1
385,597 + -2.7
385,597 + -1.1
385,616 + +1.4
385,616 + -2.3
385,617 - +0.1
385,617 - -4.2
385,783 - +0.5
385,783 - -3.4
385,824 + -1.8
385,825 - +1.6
385,825 - +0.0
385,825 - +0.1
385,825 - +0.7
385,896 + Rru_A0316 0.12 -0.9
385,908 + Rru_A0316 0.13 +1.3
385,908 + Rru_A0316 0.13 +0.7
385,908 + Rru_A0316 0.13 -2.1
385,908 + Rru_A0316 0.13 +1.1
385,909 - Rru_A0316 0.13 +0.4
385,909 - Rru_A0316 0.13 -0.6
385,909 - Rru_A0316 0.13 -0.9
385,909 - Rru_A0316 0.13 -0.7
386,034 + Rru_A0316 0.20 -3.6
386,035 - Rru_A0316 0.20 -1.4
386,035 - Rru_A0316 0.20 -0.5
386,263 - Rru_A0316 0.34 +1.1
386,263 - Rru_A0316 0.34 -3.5
386,351 + Rru_A0316 0.39 -0.9
386,352 - Rru_A0316 0.39 +0.6
386,352 - Rru_A0316 0.39 +0.4
386,364 + Rru_A0316 0.40 -1.9
386,364 + Rru_A0316 0.40 +1.4
386,364 + Rru_A0316 0.40 -2.3
386,365 - Rru_A0316 0.40 -0.1
386,365 - Rru_A0316 0.40 -0.8
386,365 - Rru_A0316 0.40 -0.7
386,366 + Rru_A0316 0.40 -2.8
386,367 - Rru_A0316 0.40 +0.0
386,430 + Rru_A0316 0.44 -0.4
386,430 + Rru_A0316 0.44 -0.4
386,431 - Rru_A0316 0.44 -1.2
386,484 + Rru_A0316 0.47 +1.0
386,485 - Rru_A0316 0.47 +0.6
386,485 - Rru_A0316 0.47 -1.7
386,556 + Rru_A0316 0.51 -1.2
386,556 + Rru_A0316 0.51 +1.0
386,557 - Rru_A0316 0.51 -0.5
386,557 - Rru_A0316 0.51 -0.3
386,557 - Rru_A0316 0.51 +0.4
386,557 - Rru_A0316 0.51 -1.2
386,649 + Rru_A0316 0.57 +1.6
386,649 + Rru_A0316 0.57 -0.2
386,650 - Rru_A0316 0.57 +0.1
386,650 - Rru_A0316 0.57 -0.6
387,088 - Rru_A0316 0.83 -0.4
387,126 + Rru_A0316 0.85 -1.6
387,126 + Rru_A0316 0.85 -0.9
387,126 + Rru_A0316 0.85 -3.1
387,126 + Rru_A0316 0.85 +0.7
387,127 - Rru_A0316 0.85 -0.4
387,127 - Rru_A0316 0.85 +1.1
387,183 + Rru_A0316 0.88 +2.4
387,184 - Rru_A0316 0.88 -1.5
387,327 + -2.4
387,327 + -1.0
387,327 + +1.1
387,375 + -0.1
387,509 + Rru_A0317 0.14 +1.2
387,509 + Rru_A0317 0.14 -1.2
387,510 - Rru_A0317 0.14 -0.3
387,680 + Rru_A0317 0.33 +0.3
387,680 + Rru_A0317 0.33 +0.7
387,680 + Rru_A0317 0.33 -2.8
387,680 + Rru_A0317 0.33 -0.9
387,680 + Rru_A0317 0.33 +1.5
387,681 - Rru_A0317 0.33 +0.5
387,681 - Rru_A0317 0.33 +0.1
387,681 - Rru_A0317 0.33 -0.6
387,681 - Rru_A0317 0.33 -1.6
387,681 - Rru_A0317 0.33 +0.9
387,681 - Rru_A0317 0.33 +0.2
387,715 - Rru_A0317 0.37 -0.9
387,741 - Rru_A0317 0.40 -1.7
387,741 - Rru_A0317 0.40 +0.6
387,741 - Rru_A0317 0.40 -0.4
387,746 + Rru_A0317 0.41 -1.6
387,746 + Rru_A0317 0.41 +0.7
387,777 + Rru_A0317 0.44 +1.0
387,778 - Rru_A0317 0.44 -1.3
387,867 - Rru_A0317 0.54 -4.9
387,867 - Rru_A0317 0.54 -1.8
388,166 - Rru_A0317 0.87 +1.0
388,352 - Rru_A0318 0.12 +0.3

Or see this region's nucleotide sequence