Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0280

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0279 and Rru_A0280 are separated by 110 nucleotidesRru_A0280 and Rru_A0281 overlap by 4 nucleotides Rru_A0279: Rru_A0279 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 343,358 to 344,485 _A0279 Rru_A0280: Rru_A0280 - Queuine tRNA-ribosyltransferase (NCBI), at 344,596 to 345,723 _A0280 Rru_A0281: Rru_A0281 - Queuosine biosynthesis protein (NCBI), at 345,720 to 346,757 _A0281 Position (kb) 344 345 346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.755 kb on + strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.756 kb on - strand, within Rru_A0279at 343.821 kb on + strand, within Rru_A0279at 343.822 kb on - strand, within Rru_A0279at 343.822 kb on - strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.005 kb on + strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.006 kb on - strand, within Rru_A0279at 344.172 kb on + strand, within Rru_A0279at 344.173 kb on - strand, within Rru_A0279at 344.173 kb on - strand, within Rru_A0279at 344.235 kb on + strand, within Rru_A0279at 344.236 kb on - strand, within Rru_A0279at 344.236 kb on - strand, within Rru_A0279at 344.494 kb on + strandat 344.494 kb on + strandat 344.494 kb on + strandat 344.495 kb on - strandat 344.495 kb on - strandat 344.557 kb on + strandat 344.557 kb on + strandat 344.590 kb on - strandat 344.597 kb on + strandat 344.598 kb on - strandat 344.598 kb on - strandat 344.705 kb on + strandat 344.708 kb on + strandat 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.777 kb on + strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.778 kb on - strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.793 kb on + strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.794 kb on - strand, within Rru_A0280at 344.993 kb on + strand, within Rru_A0280at 344.993 kb on + strand, within Rru_A0280at 344.994 kb on - strand, within Rru_A0280at 345.089 kb on + strand, within Rru_A0280at 345.089 kb on + strand, within Rru_A0280at 345.179 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.352 kb on + strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.353 kb on - strand, within Rru_A0280at 345.437 kb on + strand, within Rru_A0280at 345.437 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.539 kb on + strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.540 kb on - strand, within Rru_A0280at 345.543 kb on + strand, within Rru_A0280at 345.543 kb on + strand, within Rru_A0280at 345.544 kb on - strand, within Rru_A0280at 345.544 kb on - strand, within Rru_A0280at 345.769 kb on + strandat 345.769 kb on + strandat 345.769 kb on + strandat 345.769 kb on + strandat 345.770 kb on - strandat 345.770 kb on - strandat 345.789 kb on + strandat 345.789 kb on + strandat 345.802 kb on + strandat 345.803 kb on - strandat 346.109 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.262 kb on - strand, within Rru_A0281at 346.310 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.336 kb on + strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.601 kb on + strand, within Rru_A0281

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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343,755 + Rru_A0279 0.35 -0.6
343,755 + Rru_A0279 0.35 -0.2
343,755 + Rru_A0279 0.35 +1.5
343,755 + Rru_A0279 0.35 -1.9
343,755 + Rru_A0279 0.35 -1.0
343,755 + Rru_A0279 0.35 +0.5
343,755 + Rru_A0279 0.35 +0.9
343,756 - Rru_A0279 0.35 -4.5
343,756 - Rru_A0279 0.35 -0.2
343,756 - Rru_A0279 0.35 -2.4
343,756 - Rru_A0279 0.35 -0.8
343,756 - Rru_A0279 0.35 -0.6
343,756 - Rru_A0279 0.35 +2.7
343,756 - Rru_A0279 0.35 +1.1
343,756 - Rru_A0279 0.35 -1.2
343,756 - Rru_A0279 0.35 -1.0
343,821 + Rru_A0279 0.41 +1.1
343,822 - Rru_A0279 0.41 +0.9
343,822 - Rru_A0279 0.41 -0.3
344,005 + Rru_A0279 0.57 +1.8
344,005 + Rru_A0279 0.57 -3.0
344,005 + Rru_A0279 0.57 +0.2
344,005 + Rru_A0279 0.57 -0.2
344,006 - Rru_A0279 0.57 +1.4
344,006 - Rru_A0279 0.57 -3.6
344,006 - Rru_A0279 0.57 +0.3
344,006 - Rru_A0279 0.57 -3.4
344,006 - Rru_A0279 0.57 -1.9
344,006 - Rru_A0279 0.57 -0.8
344,172 + Rru_A0279 0.72 +1.2
344,173 - Rru_A0279 0.72 -1.4
344,173 - Rru_A0279 0.72 -2.1
344,235 + Rru_A0279 0.78 +1.2
344,236 - Rru_A0279 0.78 -1.8
344,236 - Rru_A0279 0.78 +0.6
344,494 + -4.1
344,494 + +0.6
344,494 + +0.9
344,495 - +0.0
344,495 - +1.1
344,557 + -0.9
344,557 + -2.1
344,590 - +0.7
344,597 + +0.4
344,598 - -0.1
344,598 - -4.1
344,705 + -4.3
344,708 + -0.1
344,777 + Rru_A0280 0.16 -2.0
344,777 + Rru_A0280 0.16 +0.6
344,777 + Rru_A0280 0.16 +1.6
344,777 + Rru_A0280 0.16 -0.3
344,778 - Rru_A0280 0.16 -1.6
344,778 - Rru_A0280 0.16 -3.5
344,778 - Rru_A0280 0.16 -3.9
344,778 - Rru_A0280 0.16 -0.6
344,778 - Rru_A0280 0.16 -1.5
344,778 - Rru_A0280 0.16 -2.8
344,793 + Rru_A0280 0.17 -0.8
344,793 + Rru_A0280 0.17 -1.9
344,793 + Rru_A0280 0.17 +1.6
344,793 + Rru_A0280 0.17 -2.3
344,794 - Rru_A0280 0.18 -2.1
344,794 - Rru_A0280 0.18 -0.5
344,794 - Rru_A0280 0.18 -0.8
344,993 + Rru_A0280 0.35 -2.5
344,993 + Rru_A0280 0.35 -0.6
344,994 - Rru_A0280 0.35 +0.6
345,089 + Rru_A0280 0.44 -0.3
345,089 + Rru_A0280 0.44 -3.5
345,179 + Rru_A0280 0.52 +1.8
345,352 + Rru_A0280 0.67 +1.2
345,352 + Rru_A0280 0.67 -1.2
345,352 + Rru_A0280 0.67 +1.6
345,352 + Rru_A0280 0.67 -4.1
345,352 + Rru_A0280 0.67 -1.1
345,353 - Rru_A0280 0.67 -1.7
345,353 - Rru_A0280 0.67 +1.5
345,353 - Rru_A0280 0.67 -0.8
345,437 + Rru_A0280 0.75 -0.4
345,437 + Rru_A0280 0.75 -0.5
345,539 + Rru_A0280 0.84 -1.8
345,539 + Rru_A0280 0.84 -0.5
345,539 + Rru_A0280 0.84 -0.6
345,539 + Rru_A0280 0.84 -1.2
345,539 + Rru_A0280 0.84 -1.2
345,540 - Rru_A0280 0.84 -1.7
345,540 - Rru_A0280 0.84 +1.2
345,540 - Rru_A0280 0.84 -3.1
345,540 - Rru_A0280 0.84 -2.5
345,540 - Rru_A0280 0.84 +0.0
345,540 - Rru_A0280 0.84 +1.2
345,540 - Rru_A0280 0.84 +1.7
345,540 - Rru_A0280 0.84 +1.9
345,543 + Rru_A0280 0.84 -0.4
345,543 + Rru_A0280 0.84 -1.8
345,544 - Rru_A0280 0.84 +0.2
345,544 - Rru_A0280 0.84 +1.1
345,769 + +1.9
345,769 + -0.1
345,769 + +0.4
345,769 + -0.2
345,770 - -3.3
345,770 - -0.5
345,789 + +0.2
345,789 + +0.7
345,802 + -2.0
345,803 - -3.6
346,109 + Rru_A0281 0.37 +0.9
346,218 + Rru_A0281 0.48 -2.3
346,218 + Rru_A0281 0.48 -3.3
346,218 + Rru_A0281 0.48 -0.3
346,218 + Rru_A0281 0.48 -1.1
346,219 - Rru_A0281 0.48 -1.5
346,219 - Rru_A0281 0.48 -0.4
346,219 - Rru_A0281 0.48 -0.2
346,262 - Rru_A0281 0.52 -2.1
346,310 + Rru_A0281 0.57 -0.6
346,312 + Rru_A0281 0.57 -1.7
346,312 + Rru_A0281 0.57 +0.6
346,313 - Rru_A0281 0.57 +0.1
346,313 - Rru_A0281 0.57 -0.1
346,329 - Rru_A0281 0.59 -1.5
346,329 - Rru_A0281 0.59 -2.8
346,329 - Rru_A0281 0.59 -0.1
346,336 + Rru_A0281 0.59 +0.5
346,337 - Rru_A0281 0.59 +2.5
346,337 - Rru_A0281 0.59 +0.4
346,601 + Rru_A0281 0.85 -1.3

Or see this region's nucleotide sequence