Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0265 and Rru_A0266 are separated by 150 nucleotides Rru_A0266 and Rru_A0267 are separated by 89 nucleotides
Rru_A0265: Rru_A0265 - Electron-transferring-flavoproteindehydrogenase (NCBI), at 329,145 to 330,782
_A0265
Rru_A0266: Rru_A0266 - Phage SPO1 DNA polymerase-related protein (NCBI), at 330,933 to 331,880
_A0266
Rru_A0267: Rru_A0267 - Lytic transglycosylase, catalytic (NCBI), at 331,970 to 333,694
_A0267
Position (kb) 330
331
332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 330.041 kb on - strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.058 kb on + strand, within Rru_A0265 at 330.157 kb on + strand, within Rru_A0265 at 330.157 kb on + strand, within Rru_A0265 at 330.158 kb on - strand, within Rru_A0265 at 330.455 kb on - strand, within Rru_A0265 at 330.455 kb on - strand, within Rru_A0265 at 330.866 kb on + strand at 330.867 kb on - strand at 330.871 kb on + strand at 330.871 kb on + strand at 330.871 kb on + strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.872 kb on - strand at 330.918 kb on + strand at 330.918 kb on + strand at 330.918 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 330.924 kb on + strand at 331.878 kb on + strand at 331.878 kb on + strand at 331.879 kb on - strand at 331.879 kb on - strand at 331.927 kb on - strand at 331.928 kb on + strand at 331.928 kb on + strand at 331.929 kb on - strand at 331.964 kb on + strand at 331.964 kb on + strand at 331.965 kb on - strand at 332.196 kb on - strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.264 kb on + strand, within Rru_A0267 at 332.265 kb on - strand, within Rru_A0267 at 332.265 kb on - strand, within Rru_A0267 at 332.265 kb on - strand, within Rru_A0267 at 332.412 kb on - strand, within Rru_A0267 at 332.577 kb on - strand, within Rru_A0267 at 332.867 kb on + strand, within Rru_A0267 at 332.868 kb on - strand, within Rru_A0267 at 332.868 kb on - strand, within Rru_A0267
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 330,041 - Rru_A0265 0.55 -2.6 330,058 + Rru_A0265 0.56 -2.8 330,058 + Rru_A0265 0.56 -1.6 330,058 + Rru_A0265 0.56 -1.0 330,058 + Rru_A0265 0.56 +0.8 330,058 + Rru_A0265 0.56 -2.8 330,157 + Rru_A0265 0.62 -3.6 330,157 + Rru_A0265 0.62 -1.6 330,158 - Rru_A0265 0.62 +0.7 330,455 - Rru_A0265 0.80 -2.5 330,455 - Rru_A0265 0.80 -2.1 330,866 + -0.9 330,867 - -0.8 330,871 + +0.4 330,871 + -4.0 330,871 + -1.1 330,872 - +0.4 330,872 - +1.2 330,872 - +0.9 330,872 - +0.2 330,872 - +0.6 330,872 - +1.3 330,872 - -3.8 330,872 - -1.6 330,918 + +0.5 330,918 + -2.8 330,918 + -2.6 330,924 + -0.8 330,924 + -1.8 330,924 + -3.5 330,924 + +1.2 330,924 + -0.5 331,878 + -0.0 331,878 + +1.4 331,879 - -1.2 331,879 - -1.8 331,927 - -3.4 331,928 + +0.5 331,928 + -0.2 331,929 - +1.3 331,964 + -1.4 331,964 + +0.1 331,965 - -0.1 332,196 - Rru_A0267 0.13 -0.5 332,264 + Rru_A0267 0.17 -2.1 332,264 + Rru_A0267 0.17 -3.3 332,264 + Rru_A0267 0.17 -0.1 332,264 + Rru_A0267 0.17 -0.9 332,264 + Rru_A0267 0.17 -0.7 332,264 + Rru_A0267 0.17 -0.9 332,264 + Rru_A0267 0.17 +0.8 332,265 - Rru_A0267 0.17 -2.6 332,265 - Rru_A0267 0.17 +0.2 332,265 - Rru_A0267 0.17 -2.3 332,412 - Rru_A0267 0.26 +1.9 332,577 - Rru_A0267 0.35 +1.7 332,867 + Rru_A0267 0.52 +0.3 332,868 - Rru_A0267 0.52 +0.1 332,868 - Rru_A0267 0.52 -3.7
Or see this region's nucleotide sequence