Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0261 and Rru_AR0011 are separated by 292 nucleotides Rru_AR0011 and Rru_A0262 are separated by 98 nucleotides Rru_A0262 and Rru_A0263 are separated by 624 nucleotides
Rru_A0261: Rru_A0261 - hypothetical protein (NCBI), at 322,896 to 323,807
_A0261
Rru_AR0011: Rru_AR0011 - tRNA-Gln (NCBI), at 324,100 to 324,174
_AR0011
Rru_A0262: Rru_A0262 - chemotaxis sensory transducer (NCBI), at 324,273 to 325,601
_A0262
Rru_A0263: Rru_A0263 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI), at 326,226 to 327,140
_A0263
Position (kb) 324
325
326 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 323.334 kb on + strand, within Rru_A0261 at 323.335 kb on - strand, within Rru_A0261 at 323.391 kb on + strand, within Rru_A0261 at 323.625 kb on + strand, within Rru_A0261 at 323.695 kb on + strand, within Rru_A0261 at 323.907 kb on - strand at 323.915 kb on + strand at 323.916 kb on - strand at 323.916 kb on - strand at 323.966 kb on + strand at 324.015 kb on + strand at 324.274 kb on + strand at 324.274 kb on + strand at 324.275 kb on - strand at 324.600 kb on - strand, within Rru_A0262 at 325.150 kb on + strand, within Rru_A0262 at 325.150 kb on + strand, within Rru_A0262 at 325.150 kb on + strand, within Rru_A0262 at 325.150 kb on + strand, within Rru_A0262 at 325.151 kb on - strand, within Rru_A0262 at 325.180 kb on + strand, within Rru_A0262 at 325.180 kb on + strand, within Rru_A0262 at 325.180 kb on + strand, within Rru_A0262 at 325.181 kb on - strand, within Rru_A0262 at 325.181 kb on - strand, within Rru_A0262 at 325.181 kb on - strand, within Rru_A0262 at 325.282 kb on + strand, within Rru_A0262 at 325.283 kb on - strand, within Rru_A0262 at 325.294 kb on + strand, within Rru_A0262 at 325.295 kb on - strand, within Rru_A0262 at 325.295 kb on - strand, within Rru_A0262 at 325.295 kb on - strand, within Rru_A0262 at 325.484 kb on - strand at 325.539 kb on + strand at 325.540 kb on - strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.640 kb on + strand at 325.640 kb on + strand at 325.641 kb on - strand at 325.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 323,334 + Rru_A0261 0.48 +0.1 323,335 - Rru_A0261 0.48 -0.2 323,391 + Rru_A0261 0.54 +1.1 323,625 + Rru_A0261 0.80 -3.6 323,695 + Rru_A0261 0.88 -3.9 323,907 - -0.4 323,915 + +0.3 323,916 - -1.0 323,916 - -1.7 323,966 + +2.0 324,015 + +0.4 324,274 + +0.9 324,274 + +0.3 324,275 - +0.1 324,600 - Rru_A0262 0.25 +1.6 325,150 + Rru_A0262 0.66 +0.3 325,150 + Rru_A0262 0.66 +1.0 325,150 + Rru_A0262 0.66 +1.1 325,150 + Rru_A0262 0.66 +0.1 325,151 - Rru_A0262 0.66 +1.1 325,180 + Rru_A0262 0.68 +0.6 325,180 + Rru_A0262 0.68 -0.2 325,180 + Rru_A0262 0.68 +0.2 325,181 - Rru_A0262 0.68 -2.6 325,181 - Rru_A0262 0.68 +1.0 325,181 - Rru_A0262 0.68 -4.3 325,282 + Rru_A0262 0.76 -4.5 325,283 - Rru_A0262 0.76 +0.1 325,294 + Rru_A0262 0.77 +0.2 325,295 - Rru_A0262 0.77 -0.2 325,295 - Rru_A0262 0.77 +0.7 325,295 - Rru_A0262 0.77 -3.0 325,484 - +0.8 325,539 + -0.2 325,540 - +2.3 325,597 + -1.3 325,597 + +1.3 325,597 + -1.6 325,597 + +1.1 325,597 + -2.4 325,597 + -0.3 325,597 + +1.5 325,598 - -3.0 325,598 - +0.5 325,598 - -2.7 325,598 - -1.2 325,640 + -3.7 325,640 + -3.1 325,641 - -1.8 325,918 + -1.9
Or see this region's nucleotide sequence