Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0242 and Rru_A0243 are separated by 375 nucleotides Rru_A0243 and Rru_A0244 are separated by 191 nucleotides
Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099
_A0242
Rru_A0243: Rru_A0243 - tRNA/rRNA cytosine-C5-methylase (NCBI), at 301,475 to 302,839
_A0243
Rru_A0244: Rru_A0244 - IMP dehydrogenase (NCBI), at 303,031 to 304,494
_A0244
Position (kb) 301
302
303 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 300.598 kb on + strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.702 kb on - strand, within Rru_A0242 at 300.861 kb on + strand at 300.862 kb on - strand at 301.057 kb on - strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.118 kb on - strand at 301.138 kb on + strand at 301.138 kb on + strand at 301.139 kb on - strand at 301.185 kb on + strand at 301.186 kb on - strand at 301.208 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.221 kb on - strand at 301.221 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.406 kb on + strand at 301.407 kb on - strand at 301.407 kb on - strand at 301.407 kb on - strand at 301.417 kb on + strand at 301.417 kb on + strand at 301.418 kb on - strand at 301.418 kb on - strand at 301.477 kb on - strand at 301.672 kb on - strand, within Rru_A0243 at 301.744 kb on - strand, within Rru_A0243 at 301.744 kb on - strand, within Rru_A0243 at 301.939 kb on + strand, within Rru_A0243 at 301.976 kb on - strand, within Rru_A0243 at 302.033 kb on - strand, within Rru_A0243 at 302.471 kb on + strand, within Rru_A0243 at 302.471 kb on + strand, within Rru_A0243 at 303.021 kb on + strand at 303.027 kb on + strand at 303.027 kb on + strand at 303.027 kb on + strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.032 kb on + strand at 303.032 kb on + strand at 303.032 kb on + strand at 303.033 kb on - strand at 303.033 kb on - strand at 303.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 300,598 + Rru_A0242 0.84 +1.7 300,598 + Rru_A0242 0.84 +0.5 300,598 + Rru_A0242 0.84 +1.1 300,701 + Rru_A0242 0.87 +0.1 300,701 + Rru_A0242 0.87 -3.8 300,701 + Rru_A0242 0.87 -3.2 300,701 + Rru_A0242 0.87 +1.7 300,701 + Rru_A0242 0.87 +0.6 300,701 + Rru_A0242 0.87 -3.5 300,702 - Rru_A0242 0.87 -0.5 300,861 + +1.0 300,862 - +0.6 301,057 - -2.7 301,066 + -4.2 301,066 + -0.2 301,066 + -1.0 301,066 + -2.8 301,117 + -2.6 301,117 + -0.3 301,117 + -3.2 301,117 + +0.0 301,118 - -0.4 301,138 + +0.6 301,138 + +1.1 301,139 - -0.3 301,185 + -0.5 301,186 - +0.1 301,208 + -0.0 301,220 + -0.4 301,220 + -0.6 301,220 + +0.6 301,220 + -0.8 301,221 - +1.8 301,221 - +0.6 301,364 - -2.6 301,364 - +0.2 301,364 - +0.6 301,406 + +0.7 301,407 - +0.7 301,407 - +0.1 301,407 - -0.3 301,417 + +0.7 301,417 + -4.0 301,418 - -2.0 301,418 - +2.6 301,477 - -3.0 301,672 - Rru_A0243 0.14 -0.3 301,744 - Rru_A0243 0.20 +0.2 301,744 - Rru_A0243 0.20 -4.0 301,939 + Rru_A0243 0.34 -3.4 301,976 - Rru_A0243 0.37 +0.3 302,033 - Rru_A0243 0.41 +0.6 302,471 + Rru_A0243 0.73 -2.9 302,471 + Rru_A0243 0.73 -1.4 303,021 + +0.7 303,027 + +1.3 303,027 + +1.6 303,027 + -0.4 303,028 - +0.1 303,028 - +0.1 303,028 - -1.1 303,028 - -1.7 303,028 - +0.5 303,032 + +0.5 303,032 + +0.6 303,032 + +0.3 303,033 - -0.8 303,033 - +0.1 303,033 - -1.1
Or see this region's nucleotide sequence