Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0183

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0182 and Rru_A0183 are separated by 155 nucleotidesRru_A0183 and Rru_A0184 overlap by 1 nucleotides Rru_A0182: Rru_A0182 - hypothetical protein (NCBI), at 215,980 to 217,629 _A0182 Rru_A0183: Rru_A0183 - Cold-shock DNA-binding domain protein (NCBI), at 217,785 to 220,433 _A0183 Rru_A0184: Rru_A0184 - Protein of unknown function DUF324 (NCBI), at 220,433 to 222,079 _A0184 Position (kb) 217 218 219 220 221Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 216.785 kb on + strand, within Rru_A0182at 216.865 kb on + strand, within Rru_A0182at 216.866 kb on - strand, within Rru_A0182at 216.866 kb on - strand, within Rru_A0182at 216.872 kb on - strand, within Rru_A0182at 217.160 kb on - strand, within Rru_A0182at 217.293 kb on + strand, within Rru_A0182at 217.401 kb on - strand, within Rru_A0182at 217.605 kb on + strandat 217.605 kb on + strandat 217.605 kb on + strandat 217.615 kb on + strandat 217.615 kb on + strandat 217.615 kb on + strandat 217.616 kb on - strandat 217.670 kb on - strandat 217.833 kb on + strandat 217.908 kb on - strandat 217.936 kb on + strandat 217.937 kb on - strandat 217.937 kb on - strandat 217.950 kb on + strandat 217.951 kb on - strandat 217.952 kb on + strandat 217.952 kb on + strandat 217.953 kb on - strandat 217.960 kb on + strandat 217.960 kb on + strandat 217.961 kb on - strandat 217.961 kb on - strandat 217.961 kb on - strandat 218.186 kb on + strand, within Rru_A0183at 218.187 kb on - strand, within Rru_A0183at 218.187 kb on - strand, within Rru_A0183at 218.188 kb on + strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.189 kb on - strand, within Rru_A0183at 218.209 kb on + strand, within Rru_A0183at 218.209 kb on + strand, within Rru_A0183at 218.210 kb on - strand, within Rru_A0183at 218.210 kb on - strand, within Rru_A0183at 218.210 kb on - strand, within Rru_A0183at 218.210 kb on - strand, within Rru_A0183at 218.267 kb on + strand, within Rru_A0183at 218.267 kb on + strand, within Rru_A0183at 218.267 kb on + strand, within Rru_A0183at 218.268 kb on - strand, within Rru_A0183at 218.270 kb on - strand, within Rru_A0183at 218.352 kb on - strand, within Rru_A0183at 218.352 kb on - strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.758 kb on + strand, within Rru_A0183at 218.759 kb on - strand, within Rru_A0183at 218.759 kb on - strand, within Rru_A0183at 218.759 kb on - strand, within Rru_A0183at 218.759 kb on - strand, within Rru_A0183at 218.765 kb on + strand, within Rru_A0183at 218.766 kb on - strand, within Rru_A0183at 218.846 kb on - strand, within Rru_A0183at 218.885 kb on + strand, within Rru_A0183at 218.886 kb on - strand, within Rru_A0183at 218.978 kb on + strand, within Rru_A0183at 218.979 kb on - strand, within Rru_A0183at 219.097 kb on + strand, within Rru_A0183at 219.097 kb on + strand, within Rru_A0183at 219.097 kb on + strand, within Rru_A0183at 219.098 kb on - strand, within Rru_A0183at 219.103 kb on + strand, within Rru_A0183at 219.104 kb on - strand, within Rru_A0183at 219.445 kb on - strand, within Rru_A0183at 219.486 kb on - strand, within Rru_A0183at 219.632 kb on + strand, within Rru_A0183at 219.633 kb on - strand, within Rru_A0183at 219.633 kb on - strand, within Rru_A0183at 219.634 kb on + strand, within Rru_A0183at 219.634 kb on + strand, within Rru_A0183at 219.675 kb on + strand, within Rru_A0183at 219.676 kb on - strand, within Rru_A0183at 219.688 kb on + strand, within Rru_A0183at 219.688 kb on + strand, within Rru_A0183at 219.688 kb on + strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.712 kb on + strand, within Rru_A0183at 219.713 kb on - strand, within Rru_A0183at 219.713 kb on - strand, within Rru_A0183at 219.851 kb on + strand, within Rru_A0183at 219.852 kb on - strand, within Rru_A0183at 219.852 kb on - strand, within Rru_A0183at 219.857 kb on + strand, within Rru_A0183at 219.858 kb on - strand, within Rru_A0183at 219.922 kb on - strand, within Rru_A0183at 219.928 kb on - strand, within Rru_A0183at 220.031 kb on + strand, within Rru_A0183at 220.159 kb on + strand, within Rru_A0183at 220.159 kb on + strand, within Rru_A0183at 220.159 kb on + strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.298 kb on + strandat 220.299 kb on - strandat 220.408 kb on + strandat 220.408 kb on + strandat 220.408 kb on + strandat 220.409 kb on - strandat 220.409 kb on - strandat 220.409 kb on - strandat 220.409 kb on - strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.413 kb on - strandat 220.413 kb on - strandat 220.455 kb on + strandat 220.455 kb on + strandat 220.456 kb on - strandat 220.456 kb on - strandat 220.638 kb on + strand, within Rru_A0184at 220.721 kb on + strand, within Rru_A0184at 220.722 kb on - strand, within Rru_A0184at 220.722 kb on - strand, within Rru_A0184at 220.792 kb on - strand, within Rru_A0184at 220.792 kb on - strand, within Rru_A0184at 220.792 kb on - strand, within Rru_A0184at 220.862 kb on - strand, within Rru_A0184at 221.231 kb on + strand, within Rru_A0184at 221.231 kb on + strand, within Rru_A0184at 221.232 kb on - strand, within Rru_A0184

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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216,785 + Rru_A0182 0.49 +1.4
216,865 + Rru_A0182 0.54 +1.8
216,866 - Rru_A0182 0.54 -0.1
216,866 - Rru_A0182 0.54 -0.1
216,872 - Rru_A0182 0.54 +0.7
217,160 - Rru_A0182 0.72 -0.2
217,293 + Rru_A0182 0.80 -2.3
217,401 - Rru_A0182 0.86 -1.2
217,605 + +1.3
217,605 + +1.3
217,605 + -2.6
217,615 + -1.3
217,615 + +0.9
217,615 + -0.1
217,616 - -3.1
217,670 - +0.9
217,833 + -0.2
217,908 - -1.3
217,936 + +0.4
217,937 - +1.3
217,937 - -3.0
217,950 + -2.5
217,951 - +0.6
217,952 + +1.2
217,952 + +1.4
217,953 - -0.3
217,960 + +0.7
217,960 + +0.7
217,961 - -2.1
217,961 - +1.9
217,961 - +0.7
218,186 + Rru_A0183 0.15 +0.2
218,187 - Rru_A0183 0.15 +0.1
218,187 - Rru_A0183 0.15 -1.2
218,188 + Rru_A0183 0.15 -0.2
218,189 - Rru_A0183 0.15 -4.0
218,189 - Rru_A0183 0.15 -2.5
218,189 - Rru_A0183 0.15 +0.1
218,189 - Rru_A0183 0.15 +1.4
218,189 - Rru_A0183 0.15 +0.3
218,189 - Rru_A0183 0.15 -3.8
218,189 - Rru_A0183 0.15 -0.5
218,189 - Rru_A0183 0.15 -0.6
218,209 + Rru_A0183 0.16 -2.1
218,209 + Rru_A0183 0.16 -0.0
218,210 - Rru_A0183 0.16 -1.0
218,210 - Rru_A0183 0.16 -0.2
218,210 - Rru_A0183 0.16 -3.7
218,210 - Rru_A0183 0.16 -1.6
218,267 + Rru_A0183 0.18 +0.7
218,267 + Rru_A0183 0.18 -0.4
218,267 + Rru_A0183 0.18 +1.2
218,268 - Rru_A0183 0.18 +0.8
218,270 - Rru_A0183 0.18 +0.3
218,352 - Rru_A0183 0.21 -1.7
218,352 - Rru_A0183 0.21 +1.0
218,758 + Rru_A0183 0.37 +0.7
218,758 + Rru_A0183 0.37 -2.1
218,758 + Rru_A0183 0.37 +0.4
218,758 + Rru_A0183 0.37 +1.5
218,758 + Rru_A0183 0.37 +1.4
218,758 + Rru_A0183 0.37 +0.8
218,758 + Rru_A0183 0.37 +0.8
218,759 - Rru_A0183 0.37 +0.5
218,759 - Rru_A0183 0.37 -0.4
218,759 - Rru_A0183 0.37 +0.3
218,759 - Rru_A0183 0.37 -0.8
218,765 + Rru_A0183 0.37 +0.6
218,766 - Rru_A0183 0.37 -1.2
218,846 - Rru_A0183 0.40 +0.5
218,885 + Rru_A0183 0.42 +1.2
218,886 - Rru_A0183 0.42 -1.6
218,978 + Rru_A0183 0.45 +0.9
218,979 - Rru_A0183 0.45 +0.3
219,097 + Rru_A0183 0.50 +0.3
219,097 + Rru_A0183 0.50 +1.0
219,097 + Rru_A0183 0.50 -2.6
219,098 - Rru_A0183 0.50 +0.2
219,103 + Rru_A0183 0.50 -0.3
219,104 - Rru_A0183 0.50 +0.6
219,445 - Rru_A0183 0.63 -1.6
219,486 - Rru_A0183 0.64 -2.3
219,632 + Rru_A0183 0.70 +0.4
219,633 - Rru_A0183 0.70 +0.8
219,633 - Rru_A0183 0.70 +0.6
219,634 + Rru_A0183 0.70 +0.2
219,634 + Rru_A0183 0.70 +0.1
219,675 + Rru_A0183 0.71 +0.2
219,676 - Rru_A0183 0.71 +1.1
219,688 + Rru_A0183 0.72 -0.0
219,688 + Rru_A0183 0.72 +0.2
219,688 + Rru_A0183 0.72 +0.9
219,689 - Rru_A0183 0.72 -2.5
219,689 - Rru_A0183 0.72 +2.7
219,689 - Rru_A0183 0.72 -0.1
219,689 - Rru_A0183 0.72 -0.7
219,712 + Rru_A0183 0.73 -1.4
219,713 - Rru_A0183 0.73 +0.8
219,713 - Rru_A0183 0.73 +0.2
219,851 + Rru_A0183 0.78 -1.7
219,852 - Rru_A0183 0.78 +1.5
219,852 - Rru_A0183 0.78 -1.8
219,857 + Rru_A0183 0.78 +0.4
219,858 - Rru_A0183 0.78 +0.3
219,922 - Rru_A0183 0.81 -3.7
219,928 - Rru_A0183 0.81 -0.7
220,031 + Rru_A0183 0.85 +0.7
220,159 + Rru_A0183 0.90 +0.9
220,159 + Rru_A0183 0.90 +0.7
220,159 + Rru_A0183 0.90 +0.0
220,160 - Rru_A0183 0.90 -1.1
220,160 - Rru_A0183 0.90 +0.5
220,160 - Rru_A0183 0.90 -0.1
220,160 - Rru_A0183 0.90 -1.2
220,160 - Rru_A0183 0.90 +1.6
220,298 + +1.1
220,299 - +0.6
220,408 + -1.3
220,408 + -2.4
220,408 + -0.1
220,409 - +0.2
220,409 - +0.9
220,409 - +0.5
220,409 - -0.6
220,412 + +0.0
220,412 + +0.6
220,412 + +0.3
220,412 + +0.8
220,413 - +0.7
220,413 - +0.7
220,455 + -0.7
220,455 + +0.6
220,456 - -2.9
220,456 - -3.2
220,638 + Rru_A0184 0.12 -2.6
220,721 + Rru_A0184 0.17 -1.7
220,722 - Rru_A0184 0.18 -0.3
220,722 - Rru_A0184 0.18 -0.4
220,792 - Rru_A0184 0.22 -1.9
220,792 - Rru_A0184 0.22 -0.0
220,792 - Rru_A0184 0.22 -0.2
220,862 - Rru_A0184 0.26 -0.5
221,231 + Rru_A0184 0.48 +1.1
221,231 + Rru_A0184 0.48 +0.1
221,232 - Rru_A0184 0.49 +0.6

Or see this region's nucleotide sequence