Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0160 and Rru_A0161 are separated by 307 nucleotides Rru_A0161 and Rru_A0162 are separated by 17 nucleotides Rru_A0162 and Rru_A0163 are separated by 163 nucleotides Rru_A0163 and Rru_A0164 are separated by 80 nucleotides
Rru_A0160: Rru_A0160 - hypothetical protein (NCBI), at 186,872 to 187,168
_A0160
Rru_A0161: Rru_A0161 - Chaperonin Cpn10 (NCBI), at 187,476 to 187,790
_A0161
Rru_A0162: Rru_A0162 - Chaperonin Cpn60/TCP-1 (NCBI), at 187,808 to 189,439
_A0162
Rru_A0163: Rru_A0163 - Transcriptional Regulator, XRE family (NCBI), at 189,603 to 189,860
_A0163
Rru_A0164: Rru_A0164 - Sulfate transporter/antisigma-factor antagonist (NCBI), at 189,941 to 191,668
_A0164
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 186.880 kb on + strand at 186.880 kb on + strand at 187.038 kb on + strand, within Rru_A0160 at 187.038 kb on + strand, within Rru_A0160 at 187.038 kb on + strand, within Rru_A0160 at 187.039 kb on - strand, within Rru_A0160 at 187.039 kb on - strand, within Rru_A0160 at 187.074 kb on + strand, within Rru_A0160 at 187.075 kb on - strand, within Rru_A0160 at 187.257 kb on - strand at 187.289 kb on + strand at 187.289 kb on + strand at 187.289 kb on + strand at 187.289 kb on + strand at 187.299 kb on + strand at 187.300 kb on - strand at 187.379 kb on - strand at 187.379 kb on - strand at 187.452 kb on + strand at 187.453 kb on - strand at 187.453 kb on - strand at 187.720 kb on - strand, within Rru_A0161 at 188.402 kb on + strand, within Rru_A0162 at 188.403 kb on - strand, within Rru_A0162 at 188.403 kb on - strand, within Rru_A0162 at 188.462 kb on + strand, within Rru_A0162 at 188.462 kb on + strand, within Rru_A0162 at 188.463 kb on - strand, within Rru_A0162 at 188.886 kb on - strand, within Rru_A0162 at 188.886 kb on - strand, within Rru_A0162 at 188.886 kb on - strand, within Rru_A0162 at 188.886 kb on - strand, within Rru_A0162 at 189.242 kb on + strand, within Rru_A0162 at 189.242 kb on + strand, within Rru_A0162 at 189.242 kb on + strand, within Rru_A0162 at 189.263 kb on + strand, within Rru_A0162 at 189.263 kb on + strand, within Rru_A0162 at 189.263 kb on + strand, within Rru_A0162 at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.495 kb on + strand at 189.525 kb on + strand at 189.525 kb on + strand at 189.543 kb on + strand at 189.549 kb on + strand at 189.549 kb on + strand at 189.580 kb on + strand at 189.580 kb on + strand at 189.581 kb on - strand at 189.581 kb on - strand at 189.727 kb on + strand, within Rru_A0163 at 189.727 kb on + strand, within Rru_A0163 at 189.848 kb on + strand at 189.849 kb on - strand at 190.358 kb on + strand, within Rru_A0164 at 190.358 kb on + strand, within Rru_A0164 at 190.358 kb on + strand, within Rru_A0164 at 190.359 kb on - strand, within Rru_A0164 at 190.359 kb on - strand, within Rru_A0164 at 190.377 kb on - strand, within Rru_A0164
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 186,880 + +1.1 186,880 + -3.3 187,038 + Rru_A0160 0.56 -0.8 187,038 + Rru_A0160 0.56 +0.2 187,038 + Rru_A0160 0.56 -1.0 187,039 - Rru_A0160 0.56 +0.4 187,039 - Rru_A0160 0.56 +0.0 187,074 + Rru_A0160 0.68 +0.2 187,075 - Rru_A0160 0.68 -1.5 187,257 - +0.4 187,289 + +1.0 187,289 + -0.3 187,289 + -3.7 187,289 + +0.5 187,299 + -1.0 187,300 - -1.9 187,379 - +0.7 187,379 - -0.9 187,452 + -1.5 187,453 - +1.2 187,453 - -0.6 187,720 - Rru_A0161 0.77 +0.7 188,402 + Rru_A0162 0.36 +1.3 188,403 - Rru_A0162 0.36 -3.6 188,403 - Rru_A0162 0.36 -0.1 188,462 + Rru_A0162 0.40 +0.6 188,462 + Rru_A0162 0.40 -1.2 188,463 - Rru_A0162 0.40 +0.2 188,886 - Rru_A0162 0.66 -3.9 188,886 - Rru_A0162 0.66 -0.9 188,886 - Rru_A0162 0.66 -1.6 188,886 - Rru_A0162 0.66 -0.2 189,242 + Rru_A0162 0.88 -0.6 189,242 + Rru_A0162 0.88 +0.3 189,242 + Rru_A0162 0.88 -0.0 189,263 + Rru_A0162 0.89 -0.1 189,263 + Rru_A0162 0.89 -1.7 189,263 + Rru_A0162 0.89 +0.7 189,437 + -3.0 189,437 + -2.2 189,437 + -1.4 189,437 + +1.3 189,437 + -0.5 189,437 + -1.6 189,437 + +0.1 189,437 + +1.4 189,438 - -2.9 189,438 - +0.2 189,438 - +0.1 189,438 - -3.1 189,438 - -2.8 189,438 - -0.8 189,495 + +0.9 189,525 + -0.6 189,525 + +1.1 189,543 + +0.5 189,549 + +0.5 189,549 + -0.1 189,580 + +0.8 189,580 + +2.2 189,581 - -1.4 189,581 - +2.1 189,727 + Rru_A0163 0.48 -0.9 189,727 + Rru_A0163 0.48 +0.1 189,848 + -0.8 189,849 - -0.7 190,358 + Rru_A0164 0.24 -1.5 190,358 + Rru_A0164 0.24 -0.4 190,358 + Rru_A0164 0.24 -3.6 190,359 - Rru_A0164 0.24 +2.0 190,359 - Rru_A0164 0.24 -0.3 190,377 - Rru_A0164 0.25 -0.9
Or see this region's nucleotide sequence