Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0067

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0066 and Rru_A0067 are separated by 2 nucleotidesRru_A0067 and Rru_A0068 overlap by 17 nucleotides Rru_A0066: Rru_A0066 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 76,073 to 78,394 _A0066 Rru_A0067: Rru_A0067 - Protein of unknown function DUF123 (NCBI), at 78,397 to 78,834 _A0067 Rru_A0068: Rru_A0068 - Alpha/beta hydrolase fold (NCBI), at 78,818 to 79,945 _A0068 Position (kb) 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 77.571 kb on + strand, within Rru_A0066at 77.572 kb on - strand, within Rru_A0066at 77.597 kb on + strand, within Rru_A0066at 77.678 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.713 kb on + strand, within Rru_A0066at 77.714 kb on - strand, within Rru_A0066at 77.714 kb on - strand, within Rru_A0066at 77.807 kb on + strand, within Rru_A0066at 77.807 kb on + strand, within Rru_A0066at 77.808 kb on - strand, within Rru_A0066at 77.808 kb on - strand, within Rru_A0066at 77.808 kb on - strand, within Rru_A0066at 77.816 kb on + strand, within Rru_A0066at 77.817 kb on - strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.240 kb on - strandat 78.240 kb on - strandat 78.455 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.885 kb on + strandat 79.006 kb on + strand, within Rru_A0068at 79.158 kb on + strand, within Rru_A0068at 79.158 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.201 kb on - strand, within Rru_A0068at 79.284 kb on + strand, within Rru_A0068at 79.285 kb on - strand, within Rru_A0068at 79.285 kb on - strand, within Rru_A0068at 79.311 kb on + strand, within Rru_A0068at 79.383 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.641 kb on + strand, within Rru_A0068at 79.641 kb on + strand, within Rru_A0068at 79.642 kb on - strand, within Rru_A0068

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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77,571 + Rru_A0066 0.65 -1.2
77,572 - Rru_A0066 0.65 -3.5
77,597 + Rru_A0066 0.66 +0.6
77,678 + Rru_A0066 0.69 +0.2
77,713 + Rru_A0066 0.71 -1.6
77,713 + Rru_A0066 0.71 -0.4
77,713 + Rru_A0066 0.71 +0.8
77,713 + Rru_A0066 0.71 +0.5
77,714 - Rru_A0066 0.71 +0.2
77,714 - Rru_A0066 0.71 -1.8
77,807 + Rru_A0066 0.75 +1.1
77,807 + Rru_A0066 0.75 +0.7
77,808 - Rru_A0066 0.75 +0.2
77,808 - Rru_A0066 0.75 +0.6
77,808 - Rru_A0066 0.75 -0.8
77,816 + Rru_A0066 0.75 -3.3
77,817 - Rru_A0066 0.75 +0.0
77,831 + Rru_A0066 0.76 +0.8
77,831 + Rru_A0066 0.76 -4.2
77,831 + Rru_A0066 0.76 +0.9
77,831 + Rru_A0066 0.76 -2.9
77,831 + Rru_A0066 0.76 -0.2
77,832 - Rru_A0066 0.76 -2.8
77,832 - Rru_A0066 0.76 +0.9
77,832 - Rru_A0066 0.76 +0.3
77,832 - Rru_A0066 0.76 -3.3
78,092 + Rru_A0066 0.87 -1.8
78,092 + Rru_A0066 0.87 -1.7
78,092 + Rru_A0066 0.87 +0.7
78,093 - Rru_A0066 0.87 +1.5
78,093 - Rru_A0066 0.87 +0.3
78,093 - Rru_A0066 0.87 +0.6
78,093 - Rru_A0066 0.87 +1.4
78,240 - +0.9
78,240 - +1.1
78,455 - Rru_A0067 0.13 +1.3
78,530 - Rru_A0067 0.30 +0.3
78,530 - Rru_A0067 0.30 +0.7
78,530 - Rru_A0067 0.30 -0.7
78,530 - Rru_A0067 0.30 +0.2
78,535 + Rru_A0067 0.32 -1.8
78,535 + Rru_A0067 0.32 -0.3
78,535 + Rru_A0067 0.32 -3.0
78,535 + Rru_A0067 0.32 -0.4
78,535 + Rru_A0067 0.32 -1.0
78,536 - Rru_A0067 0.32 -0.3
78,536 - Rru_A0067 0.32 -0.2
78,536 - Rru_A0067 0.32 -1.8
78,885 + +0.1
79,006 + Rru_A0068 0.17 -1.3
79,158 + Rru_A0068 0.30 +0.8
79,158 + Rru_A0068 0.30 +0.4
79,200 + Rru_A0068 0.34 +0.6
79,200 + Rru_A0068 0.34 -0.5
79,200 + Rru_A0068 0.34 +1.3
79,200 + Rru_A0068 0.34 -3.9
79,201 - Rru_A0068 0.34 +0.9
79,284 + Rru_A0068 0.41 +0.8
79,285 - Rru_A0068 0.41 +1.3
79,285 - Rru_A0068 0.41 -1.8
79,311 + Rru_A0068 0.44 +0.2
79,383 + Rru_A0068 0.50 -0.7
79,518 + Rru_A0068 0.62 -0.6
79,518 + Rru_A0068 0.62 -3.7
79,518 + Rru_A0068 0.62 -3.2
79,518 + Rru_A0068 0.62 +1.4
79,518 + Rru_A0068 0.62 +1.8
79,518 + Rru_A0068 0.62 +0.0
79,518 + Rru_A0068 0.62 -1.8
79,518 + Rru_A0068 0.62 -0.8
79,518 + Rru_A0068 0.62 +1.0
79,519 - Rru_A0068 0.62 +2.6
79,519 - Rru_A0068 0.62 +0.4
79,519 - Rru_A0068 0.62 -0.8
79,519 - Rru_A0068 0.62 +0.7
79,519 - Rru_A0068 0.62 -3.4
79,519 - Rru_A0068 0.62 +0.4
79,519 - Rru_A0068 0.62 +0.9
79,641 + Rru_A0068 0.73 -2.0
79,641 + Rru_A0068 0.73 -0.8
79,642 - Rru_A0068 0.73 -1.2

Or see this region's nucleotide sequence