Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0054

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0053 and Rru_A0054 are separated by 637 nucleotidesRru_A0054 and Rru_A0055 are separated by 84 nucleotides Rru_A0053: Rru_A0053 - Carboxyl transferase (NCBI), at 55,947 to 57,479 _A0053 Rru_A0054: Rru_A0054 - Deoxyxylulose-5-phosphate synthase (NCBI), at 58,117 to 60,054 _A0054 Rru_A0055: Rru_A0055 - VacJ-like lipoprotein (NCBI), at 60,139 to 61,011 _A0055 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 57.395 kb on + strandat 57.395 kb on + strandat 57.395 kb on + strandat 57.395 kb on + strandat 57.396 kb on - strandat 57.396 kb on - strandat 57.396 kb on - strandat 57.479 kb on + strandat 57.479 kb on + strandat 57.480 kb on - strandat 57.494 kb on - strandat 57.494 kb on - strandat 57.821 kb on + strandat 57.821 kb on + strandat 57.821 kb on + strandat 57.822 kb on - strandat 57.823 kb on + strandat 57.823 kb on + strandat 57.823 kb on + strandat 57.824 kb on - strandat 57.824 kb on - strandat 57.827 kb on + strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.896 kb on - strandat 57.939 kb on - strandat 58.003 kb on + strandat 58.008 kb on + strandat 58.009 kb on - strandat 58.009 kb on - strandat 58.810 kb on + strand, within Rru_A0054at 58.810 kb on + strand, within Rru_A0054at 58.865 kb on - strand, within Rru_A0054at 58.865 kb on - strand, within Rru_A0054at 60.071 kb on + strandat 60.072 kb on - strandat 60.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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57,395 + -3.6
57,395 + -3.3
57,395 + -0.5
57,395 + -3.3
57,396 - -2.9
57,396 - -2.3
57,396 - -0.7
57,479 + -1.5
57,479 + -2.2
57,480 - -2.8
57,494 - -0.1
57,494 - -1.0
57,821 + -2.0
57,821 + -0.3
57,821 + -4.5
57,822 - +0.4
57,823 + -1.1
57,823 + -4.3
57,823 + -3.8
57,824 - +0.8
57,824 - -3.0
57,827 + -2.8
57,896 - +0.5
57,896 - +0.4
57,896 - -3.7
57,896 - +2.3
57,896 - -3.4
57,939 - -2.6
58,003 + -2.9
58,008 + -0.3
58,009 - +0.1
58,009 - +0.9
58,810 + Rru_A0054 0.36 +0.4
58,810 + Rru_A0054 0.36 +0.5
58,865 - Rru_A0054 0.39 +0.4
58,865 - Rru_A0054 0.39 +1.7
60,071 + -2.5
60,072 - -3.6
60,131 - +1.9

Or see this region's nucleotide sequence