Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0051

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0048 and Rru_A0049 are separated by 78 nucleotidesRru_A0049 and Rru_A0050 overlap by 4 nucleotidesRru_A0050 and Rru_A0051 are separated by 12 nucleotidesRru_A0051 and Rru_A0052 are separated by 305 nucleotides Rru_A0048: Rru_A0048 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 50,520 to 51,146 _A0048 Rru_A0049: Rru_A0049 - Biotin/lipoyl attachment (NCBI), at 51,225 to 51,629 _A0049 Rru_A0050: Rru_A0050 - hypothetical protein (NCBI), at 51,626 to 52,033 _A0050 Rru_A0051: Rru_A0051 - Carboxyl transferase (NCBI), at 52,046 to 53,599 _A0051 Rru_A0052: Rru_A0052 - Biotin carboxylase (NCBI), at 53,905 to 55,893 _A0052 Position (kb) 52 53 54Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.078 kb on - strand, within Rru_A0048at 51.078 kb on - strand, within Rru_A0048at 51.646 kb on + strandat 51.754 kb on + strand, within Rru_A0050at 51.755 kb on - strand, within Rru_A0050at 51.755 kb on - strand, within Rru_A0050at 51.781 kb on + strand, within Rru_A0050at 51.781 kb on + strand, within Rru_A0050at 51.781 kb on + strand, within Rru_A0050at 51.782 kb on - strand, within Rru_A0050at 51.786 kb on + strand, within Rru_A0050at 52.047 kb on + strandat 52.047 kb on + strandat 52.047 kb on + strandat 52.047 kb on + strandat 52.185 kb on + strandat 52.185 kb on + strandat 52.185 kb on + strandat 52.209 kb on + strand, within Rru_A0051at 52.210 kb on - strand, within Rru_A0051at 52.272 kb on + strand, within Rru_A0051at 52.273 kb on - strand, within Rru_A0051at 52.387 kb on - strand, within Rru_A0051at 52.387 kb on - strand, within Rru_A0051at 52.434 kb on + strand, within Rru_A0051at 52.434 kb on + strand, within Rru_A0051at 52.629 kb on + strand, within Rru_A0051at 52.629 kb on + strand, within Rru_A0051at 52.630 kb on - strand, within Rru_A0051at 52.630 kb on - strand, within Rru_A0051at 52.630 kb on - strand, within Rru_A0051at 52.825 kb on + strand, within Rru_A0051at 52.826 kb on - strand, within Rru_A0051at 52.826 kb on - strand, within Rru_A0051at 52.826 kb on - strand, within Rru_A0051at 52.921 kb on + strand, within Rru_A0051at 53.055 kb on + strand, within Rru_A0051at 53.073 kb on + strand, within Rru_A0051at 53.163 kb on + strand, within Rru_A0051at 53.163 kb on + strand, within Rru_A0051at 53.419 kb on + strand, within Rru_A0051at 53.420 kb on - strand, within Rru_A0051at 53.420 kb on - strand, within Rru_A0051at 53.463 kb on + strandat 53.709 kb on + strandat 53.709 kb on + strandat 53.710 kb on - strandat 53.710 kb on - strandat 53.906 kb on + strandat 53.907 kb on - strandat 53.907 kb on - strandat 54.114 kb on - strand, within Rru_A0052at 54.124 kb on - strand, within Rru_A0052at 54.124 kb on - strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.158 kb on + strand, within Rru_A0052at 54.312 kb on - strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.453 kb on + strand, within Rru_A0052at 54.454 kb on - strand, within Rru_A0052at 54.557 kb on + strand, within Rru_A0052at 54.558 kb on - strand, within Rru_A0052

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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51,077 + Rru_A0048 0.89 -0.2
51,077 + Rru_A0048 0.89 +1.2
51,077 + Rru_A0048 0.89 +0.4
51,077 + Rru_A0048 0.89 +1.1
51,077 + Rru_A0048 0.89 +0.5
51,077 + Rru_A0048 0.89 +0.1
51,078 - Rru_A0048 0.89 -2.8
51,078 - Rru_A0048 0.89 +0.8
51,646 + +1.6
51,754 + Rru_A0050 0.31 +2.4
51,755 - Rru_A0050 0.32 -1.4
51,755 - Rru_A0050 0.32 -2.0
51,781 + Rru_A0050 0.38 -2.3
51,781 + Rru_A0050 0.38 +0.7
51,781 + Rru_A0050 0.38 -0.4
51,782 - Rru_A0050 0.38 +0.5
51,786 + Rru_A0050 0.39 +1.6
52,047 + +0.4
52,047 + +1.3
52,047 + -3.6
52,047 + -4.3
52,185 + +0.3
52,185 + +1.2
52,185 + -0.2
52,209 + Rru_A0051 0.10 +0.7
52,210 - Rru_A0051 0.11 -1.3
52,272 + Rru_A0051 0.15 +1.2
52,273 - Rru_A0051 0.15 -0.7
52,387 - Rru_A0051 0.22 +0.6
52,387 - Rru_A0051 0.22 +1.2
52,434 + Rru_A0051 0.25 -0.6
52,434 + Rru_A0051 0.25 +1.3
52,629 + Rru_A0051 0.38 +0.8
52,629 + Rru_A0051 0.38 +0.2
52,630 - Rru_A0051 0.38 +0.3
52,630 - Rru_A0051 0.38 +1.3
52,630 - Rru_A0051 0.38 +0.4
52,825 + Rru_A0051 0.50 +1.5
52,826 - Rru_A0051 0.50 +0.3
52,826 - Rru_A0051 0.50 -0.3
52,826 - Rru_A0051 0.50 +0.7
52,921 + Rru_A0051 0.56 +0.4
53,055 + Rru_A0051 0.65 +3.0
53,073 + Rru_A0051 0.66 +0.8
53,163 + Rru_A0051 0.72 +0.4
53,163 + Rru_A0051 0.72 +0.7
53,419 + Rru_A0051 0.88 +0.8
53,420 - Rru_A0051 0.88 -0.2
53,420 - Rru_A0051 0.88 -1.9
53,463 + -2.5
53,709 + -2.6
53,709 + +0.9
53,710 - +0.4
53,710 - +0.3
53,906 + -0.4
53,907 - -1.0
53,907 - -0.2
54,114 - Rru_A0052 0.11 -4.1
54,124 - Rru_A0052 0.11 -4.9
54,124 - Rru_A0052 0.11 -2.1
54,158 + Rru_A0052 0.13 -2.6
54,158 + Rru_A0052 0.13 -1.8
54,158 + Rru_A0052 0.13 -3.6
54,158 + Rru_A0052 0.13 -0.7
54,158 + Rru_A0052 0.13 -2.5
54,312 - Rru_A0052 0.20 -0.6
54,453 + Rru_A0052 0.28 -2.1
54,453 + Rru_A0052 0.28 -3.1
54,453 + Rru_A0052 0.28 -2.5
54,453 + Rru_A0052 0.28 -0.9
54,454 - Rru_A0052 0.28 -4.1
54,557 + Rru_A0052 0.33 -2.5
54,558 - Rru_A0052 0.33 -5.4

Or see this region's nucleotide sequence