Experiment: Thallium(I) acetate 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chlD and tRNA-Arg are separated by 585 nucleotides tRNA-Arg and Synpcc7942_2275 overlap by 27 nucleotides Synpcc7942_2275 and Synpcc7942_2276 overlap by 34 nucleotides Synpcc7942_2276 and Synpcc7942_2277 are separated by 256 nucleotides
Synpcc7942_2274: chlD - protoporphyrin IX magnesium-chelatase, at 2,340,963 to 2,342,996
chlD
Synpcc7942_R0011: tRNA-Arg - tRNA-Arg, at 2,343,582 to 2,343,657
tRNA-Arg
Synpcc7942_2275: Synpcc7942_2275 - hypothetical protein, at 2,343,631 to 2,343,915
_2275
Synpcc7942_2276: Synpcc7942_2276 - hypothetical protein, at 2,343,882 to 2,344,334
_2276
Synpcc7942_2277: Synpcc7942_2277 - hypothetical protein, at 2,344,591 to 2,344,899
_2277
Position (kb)
2343
2344 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2343.019 kb on + strand at 2343.034 kb on + strand at 2343.212 kb on - strand at 2343.221 kb on - strand at 2343.406 kb on - strand at 2343.447 kb on + strand at 2343.447 kb on + strand at 2343.455 kb on - strand at 2343.499 kb on - strand at 2343.505 kb on - strand at 2343.524 kb on - strand at 2343.715 kb on + strand, within Synpcc7942_2275 at 2343.718 kb on - strand, within Synpcc7942_2275 at 2343.780 kb on - strand, within Synpcc7942_2275 at 2343.791 kb on + strand, within Synpcc7942_2275 at 2343.866 kb on + strand, within Synpcc7942_2275 at 2343.909 kb on + strand at 2343.909 kb on + strand at 2343.917 kb on - strand at 2343.917 kb on - strand at 2343.932 kb on - strand, within Synpcc7942_2276 at 2343.952 kb on - strand, within Synpcc7942_2276 at 2343.959 kb on - strand, within Synpcc7942_2276 at 2343.970 kb on + strand, within Synpcc7942_2276 at 2343.970 kb on + strand, within Synpcc7942_2276 at 2343.995 kb on + strand, within Synpcc7942_2276 at 2344.003 kb on - strand, within Synpcc7942_2276 at 2344.005 kb on + strand, within Synpcc7942_2276 at 2344.005 kb on + strand, within Synpcc7942_2276 at 2344.013 kb on - strand, within Synpcc7942_2276 at 2344.028 kb on - strand, within Synpcc7942_2276 at 2344.029 kb on - strand, within Synpcc7942_2276 at 2344.040 kb on + strand, within Synpcc7942_2276 at 2344.053 kb on + strand, within Synpcc7942_2276 at 2344.082 kb on - strand, within Synpcc7942_2276 at 2344.132 kb on + strand, within Synpcc7942_2276 at 2344.140 kb on - strand, within Synpcc7942_2276 at 2344.140 kb on - strand at 2344.142 kb on + strand, within Synpcc7942_2276 at 2344.176 kb on - strand, within Synpcc7942_2276 at 2344.247 kb on + strand, within Synpcc7942_2276 at 2344.249 kb on + strand, within Synpcc7942_2276 at 2344.376 kb on + strand at 2344.403 kb on - strand at 2344.404 kb on - strand at 2344.426 kb on + strand at 2344.451 kb on - strand at 2344.485 kb on - strand at 2344.486 kb on - strand at 2344.499 kb on + strand at 2344.587 kb on + strand at 2344.604 kb on + strand at 2344.619 kb on + strand at 2344.638 kb on + strand, within Synpcc7942_2277 at 2344.698 kb on - strand, within Synpcc7942_2277 at 2344.746 kb on - strand, within Synpcc7942_2277 at 2344.763 kb on + strand, within Synpcc7942_2277 at 2344.777 kb on + strand, within Synpcc7942_2277 at 2344.784 kb on - strand, within Synpcc7942_2277 at 2344.790 kb on - strand, within Synpcc7942_2277 at 2344.849 kb on - strand, within Synpcc7942_2277 at 2344.858 kb on + strand, within Synpcc7942_2277 at 2344.858 kb on + strand, within Synpcc7942_2277 at 2344.858 kb on + strand, within Synpcc7942_2277 at 2344.866 kb on - strand, within Synpcc7942_2277 at 2344.888 kb on - strand at 2344.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.00390625 mg/ml remove 2,343,019 + -2.0 2,343,034 + +0.8 2,343,212 - -0.9 2,343,221 - +0.1 2,343,406 - +1.1 2,343,447 + -1.8 2,343,447 + +0.5 2,343,455 - +0.4 2,343,499 - +1.0 2,343,505 - -1.5 2,343,524 - +0.0 2,343,715 + Synpcc7942_2275 0.29 -0.5 2,343,718 - Synpcc7942_2275 0.31 -1.8 2,343,780 - Synpcc7942_2275 0.52 -1.5 2,343,791 + Synpcc7942_2275 0.56 +0.5 2,343,866 + Synpcc7942_2275 0.82 -0.5 2,343,909 + -1.0 2,343,909 + +3.6 2,343,917 - +1.1 2,343,917 - +0.1 2,343,932 - Synpcc7942_2276 0.11 -1.5 2,343,952 - Synpcc7942_2276 0.15 +0.1 2,343,959 - Synpcc7942_2276 0.17 +1.9 2,343,970 + Synpcc7942_2276 0.19 +0.7 2,343,970 + Synpcc7942_2276 0.19 -0.5 2,343,995 + Synpcc7942_2276 0.25 +0.8 2,344,003 - Synpcc7942_2276 0.27 -2.0 2,344,005 + Synpcc7942_2276 0.27 -2.0 2,344,005 + Synpcc7942_2276 0.27 -3.0 2,344,013 - Synpcc7942_2276 0.29 -0.0 2,344,028 - Synpcc7942_2276 0.32 -1.2 2,344,029 - Synpcc7942_2276 0.32 +2.1 2,344,040 + Synpcc7942_2276 0.35 -0.5 2,344,053 + Synpcc7942_2276 0.38 +0.5 2,344,082 - Synpcc7942_2276 0.44 -1.5 2,344,132 + Synpcc7942_2276 0.55 -0.5 2,344,140 - Synpcc7942_2276 0.57 +0.1 2,344,140 - -0.5 2,344,142 + Synpcc7942_2276 0.57 +0.2 2,344,176 - Synpcc7942_2276 0.65 -2.0 2,344,247 + Synpcc7942_2276 0.81 +0.5 2,344,249 + Synpcc7942_2276 0.81 +1.1 2,344,376 + -0.1 2,344,403 - +0.9 2,344,404 - +2.7 2,344,426 + +1.5 2,344,451 - +1.4 2,344,485 - +1.8 2,344,486 - +2.3 2,344,499 + +1.4 2,344,587 + +1.5 2,344,604 + +2.1 2,344,619 + +0.3 2,344,638 + Synpcc7942_2277 0.15 +0.1 2,344,698 - Synpcc7942_2277 0.35 +1.9 2,344,746 - Synpcc7942_2277 0.50 +1.9 2,344,763 + Synpcc7942_2277 0.56 +0.5 2,344,777 + Synpcc7942_2277 0.60 -0.5 2,344,784 - Synpcc7942_2277 0.62 -2.5 2,344,790 - Synpcc7942_2277 0.64 -2.0 2,344,849 - Synpcc7942_2277 0.83 +0.8 2,344,858 + Synpcc7942_2277 0.86 -1.0 2,344,858 + Synpcc7942_2277 0.86 -1.0 2,344,858 + Synpcc7942_2277 0.86 -1.5 2,344,866 - Synpcc7942_2277 0.89 -0.5 2,344,888 - -1.6 2,344,913 - +0.4
Or see this region's nucleotide sequence