Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37340

Experiment: L-Phenylalanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine (N)
3,855,420	+		RR42_RS37335	0.79	+0.3
3,855,421	-		RR42_RS37335	0.79	+0.4
3,855,442	+		RR42_RS37335	0.80	-0.2
3,855,443	-		RR42_RS37335	0.80	-0.2
3,855,565	+		RR42_RS37335	0.85	-1.0
3,855,597	+		RR42_RS37335	0.86	-0.2
3,855,598	-		RR42_RS37335	0.86	+0.3
3,855,598	-		RR42_RS37335	0.86	-0.1
3,855,604	-		RR42_RS37335	0.87	+0.9
3,855,604	-		RR42_RS37335	0.87	-0.4
3,855,604	-		RR42_RS37335	0.87	-0.8
3,856,143	-				-0.4
3,856,366	+		RR42_RS37340	0.14	-0.9
3,856,585	+		RR42_RS37340	0.24	+0.6
3,856,585	+		RR42_RS37340	0.24	-0.8
3,856,585	+		RR42_RS37340	0.24	-1.5
3,856,586	-		RR42_RS37340	0.24	-0.3
3,856,586	-		RR42_RS37340	0.24	-1.5
3,856,586	-		RR42_RS37340	0.24	+0.3
3,856,699	+		RR42_RS37340	0.29	-0.4
3,856,699	+		RR42_RS37340	0.29	-1.7
3,856,700	-		RR42_RS37340	0.29	-0.8
3,856,714	-		RR42_RS37340	0.30	+0.7
3,856,727	-		RR42_RS37340	0.30	-0.1
3,856,727	-		RR42_RS37340	0.30	-0.7
3,856,727	-		RR42_RS37340	0.30	+0.5
3,856,727	-		RR42_RS37340	0.30	+0.8
3,856,816	+		RR42_RS37340	0.35	-2.1
3,856,817	-		RR42_RS37340	0.35	+0.6
3,856,837	+		RR42_RS37340	0.36	-1.2
3,856,837	+		RR42_RS37340	0.36	-0.8
3,856,837	+		RR42_RS37340	0.36	+0.2
3,856,837	+		RR42_RS37340	0.36	+0.3
3,856,837	+		RR42_RS37340	0.36	-0.6
3,856,838	-		RR42_RS37340	0.36	-0.2
3,856,875	+		RR42_RS37340	0.37	+0.1
3,856,875	+		RR42_RS37340	0.37	+0.9
3,856,976	-		RR42_RS37340	0.42	-2.5
3,856,976	-		RR42_RS37340	0.42	-0.5
3,856,976	-		RR42_RS37340	0.42	-0.5
3,856,976	-		RR42_RS37340	0.42	+0.6
3,856,976	-		RR42_RS37340	0.42	+0.1
3,857,017	+		RR42_RS37340	0.44	+0.2
3,857,018	-		RR42_RS37340	0.44	-0.0
3,857,018	-		RR42_RS37340	0.44	-0.7
3,857,044	+		RR42_RS37340	0.45	+0.7
3,857,045	-		RR42_RS37340	0.45	-0.6
3,857,045	-		RR42_RS37340	0.45	+0.0
3,857,198	-		RR42_RS37340	0.52	-0.1
3,857,331	-		RR42_RS37340	0.58	+0.5
3,857,331	-		RR42_RS37340	0.58	+1.0
3,857,369	-		RR42_RS37340	0.60	-0.6
3,857,443	+		RR42_RS37340	0.64	+0.3
3,857,443	+		RR42_RS37340	0.64	+0.6
3,857,443	+		RR42_RS37340	0.64	-1.0
3,857,444	-		RR42_RS37340	0.64	-1.0
3,857,444	-		RR42_RS37340	0.64	-0.8
3,857,444	-		RR42_RS37340	0.64	-0.1
3,857,551	+		RR42_RS37340	0.69	-0.6
3,857,551	+		RR42_RS37340	0.69	-0.2
3,857,551	+		RR42_RS37340	0.69	-0.8
3,857,551	+		RR42_RS37340	0.69	+0.0
3,857,551	+		RR42_RS37340	0.69	-1.2
3,857,552	-		RR42_RS37340	0.69	-1.3
3,857,552	-				+1.3
3,857,552	-		RR42_RS37340	0.69	-0.6
3,857,552	-		RR42_RS37340	0.69	+0.5
3,857,552	-		RR42_RS37340	0.69	-0.2
3,857,552	-		RR42_RS37340	0.69	+0.9
3,857,689	+		RR42_RS37340	0.75	+1.8
3,857,689	+		RR42_RS37340	0.75	-1.0
3,857,690	-		RR42_RS37340	0.75	-2.1
3,857,737	-		RR42_RS37340	0.77	-0.4
3,857,770	+		RR42_RS37340	0.79	-2.1
3,857,771	-		RR42_RS37340	0.79	-0.1
3,857,771	-		RR42_RS37340	0.79	-0.7
3,857,786	+		RR42_RS37340	0.79	+0.1
3,857,786	+		RR42_RS37340	0.79	-1.4
3,857,787	-		RR42_RS37340	0.79	-0.8
3,857,863	+		RR42_RS37340	0.83	+0.1
3,857,864	-		RR42_RS37340	0.83	-0.2
3,857,890	+		RR42_RS37340	0.84	-0.6
3,857,971	+		RR42_RS37340	0.88	+0.0
3,857,971	+		RR42_RS37340	0.88	-0.5
3,857,971	+		RR42_RS37340	0.88	-0.2
3,857,971	+		RR42_RS37340	0.88	-0.0
3,857,972	-		RR42_RS37340	0.88	-1.5
3,857,972	-		RR42_RS37340	0.88	+0.2
3,857,972	-				-0.2
3,857,975	+		RR42_RS37340	0.88	-0.2
3,857,975	+		RR42_RS37340	0.88	-0.1
3,857,975	+		RR42_RS37340	0.88	-1.2
3,857,975	+		RR42_RS37340	0.88	-0.6
3,857,975	+		RR42_RS37340	0.88	-0.2
3,857,975	+		RR42_RS37340	0.88	+0.4
3,857,975	+		RR42_RS37340	0.88	-0.8
3,857,975	+		RR42_RS37340	0.88	-1.0
3,857,975	+		RR42_RS37340	0.88	-0.5
3,857,976	-		RR42_RS37340	0.88	-0.0
3,857,976	-		RR42_RS37340	0.88	+1.2
3,857,976	-		RR42_RS37340	0.88	-0.4
3,857,976	-		RR42_RS37340	0.88	+0.5
3,857,976	-		RR42_RS37340	0.88	+1.6
3,857,976	-		RR42_RS37340	0.88	-0.7
3,857,976	-		RR42_RS37340	0.88	-0.3
3,857,976	-		RR42_RS37340	0.88	-0.9
3,857,976	-		RR42_RS37340	0.88	-0.7
3,857,976	-		RR42_RS37340	0.88	-0.6
3,857,977	+		RR42_RS37340	0.88	-0.0
3,857,977	+		RR42_RS37340	0.88	+1.9
3,857,978	-		RR42_RS37340	0.88	-1.0
3,857,978	-		RR42_RS37340	0.88	-0.4
3,857,978	-		RR42_RS37340	0.88	-0.4
3,857,978	-		RR42_RS37340	0.88	-0.7
3,857,978	-		RR42_RS37340	0.88	-1.5
3,858,414	+		RR42_RS37345	0.11	-0.4
3,858,414	+		RR42_RS37345	0.11	-0.4
3,858,414	+		RR42_RS37345	0.11	-0.7
3,858,415	-		RR42_RS37345	0.11	-0.3
3,858,415	-		RR42_RS37345	0.11	-0.2
3,858,415	-		RR42_RS37345	0.11	-0.1
3,858,435	+		RR42_RS37345	0.14	-0.6
3,858,436	-		RR42_RS37345	0.14	-0.7
3,858,568	+		RR42_RS37345	0.31	-0.3
3,858,568	+		RR42_RS37345	0.31	+0.8
3,858,568	+		RR42_RS37345	0.31	+1.8
3,858,568	+		RR42_RS37345	0.31	+0.0
3,858,569	-		RR42_RS37345	0.31	+0.1
3,858,569	-		RR42_RS37345	0.31	+0.5
3,858,600	+		RR42_RS37345	0.35	-0.4
3,858,601	-		RR42_RS37345	0.36	-0.1
3,858,601	-		RR42_RS37345	0.36	-0.4
3,858,705	+		RR42_RS37345	0.49	-3.2
3,858,705	+		RR42_RS37345	0.49	-1.2
3,858,705	+		RR42_RS37345	0.49	-0.2
3,858,706	-		RR42_RS37345	0.49	-0.3
3,858,706	-		RR42_RS37345	0.49	-0.2
3,858,706	-		RR42_RS37345	0.49	+0.3
3,858,706	-		RR42_RS37345	0.49	-0.5
3,858,706	-		RR42_RS37345	0.49	-2.1
3,858,727	+		RR42_RS37345	0.52	-0.5
3,858,727	+		RR42_RS37345	0.52	-0.5
3,858,882	+		RR42_RS37345	0.72	-1.0
3,858,882	+		RR42_RS37345	0.72	-0.5
3,858,882	+		RR42_RS37345	0.72	-0.7
3,858,882	+		RR42_RS37345	0.72	-1.4
3,858,882	+		RR42_RS37345	0.72	+1.0
3,858,882	+		RR42_RS37345	0.72	-0.4
3,858,882	+		RR42_RS37345	0.72	+0.1
3,858,882	+				-0.7
3,858,882	+		RR42_RS37345	0.72	-0.7
3,858,882	+		RR42_RS37345	0.72	-0.3
3,858,882	+		RR42_RS37345	0.72	-0.2
3,858,882	+		RR42_RS37345	0.72	-0.4
3,858,882	+		RR42_RS37345	0.72	+0.1
3,858,882	+		RR42_RS37345	0.72	-0.5
3,858,882	+		RR42_RS37345	0.72	+0.5
3,858,882	+		RR42_RS37345	0.72	+0.9
3,858,883	-		RR42_RS37345	0.72	+0.3
3,858,883	-		RR42_RS37345	0.72	+0.1
3,858,883	-		RR42_RS37345	0.72	+0.2
3,858,883	-		RR42_RS37345	0.72	+0.1
3,858,883	-		RR42_RS37345	0.72	-0.7
3,858,883	-		RR42_RS37345	0.72	-0.2
3,858,883	-				-0.2
3,858,883	-		RR42_RS37345	0.72	+0.5
3,859,002	-		RR42_RS37345	0.87	-0.6
3,859,002	-		RR42_RS37345	0.87	-0.4
3,859,117	+				-0.2
3,859,117	+				+0.1
3,859,117	+				+1.0
3,859,118	-				-0.7
3,859,118	-				-1.2
3,859,177	+		RR42_RS37350	0.12	-0.2
3,859,177	+		RR42_RS37350	0.12	-0.8
3,859,177	+		RR42_RS37350	0.12	-0.9
3,859,177	+		RR42_RS37350	0.12	-0.5
3,859,199	-		RR42_RS37350	0.15	-0.3