Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28185

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28180 and RR42_RS28185 are separated by 82 nucleotidesRR42_RS28185 and RR42_RS28190 are separated by 84 nucleotidesRR42_RS28190 and RR42_RS28195 are separated by 73 nucleotides RR42_RS28180: RR42_RS28180 - membrane protein, at 1,678,999 to 1,679,895 _RS28180 RR42_RS28185: RR42_RS28185 - GntR family transcriptional regulator, at 1,679,978 to 1,681,423 _RS28185 RR42_RS28190: RR42_RS28190 - MerR family transcriptional regulator, at 1,681,508 to 1,681,945 _RS28190 RR42_RS28195: RR42_RS28195 - SAM-dependent methyltransferase, at 1,682,019 to 1,682,897 _RS28195 Position (kb) 1679 1680 1681 1682Strain fitness (log2 ratio) -2 -1 0 1 2at 1679.210 kb on + strandat 1679.210 kb on + strand, within RR42_RS28180at 1679.372 kb on + strand, within RR42_RS28180at 1679.372 kb on + strand, within RR42_RS28180at 1679.372 kb on + strand, within RR42_RS28180at 1679.373 kb on - strand, within RR42_RS28180at 1679.403 kb on - strand, within RR42_RS28180at 1679.530 kb on + strand, within RR42_RS28180at 1679.531 kb on - strand, within RR42_RS28180at 1679.687 kb on - strand, within RR42_RS28180at 1679.838 kb on - strandat 1679.931 kb on + strandat 1680.040 kb on + strandat 1680.041 kb on - strandat 1680.109 kb on + strandat 1680.110 kb on - strandat 1680.188 kb on + strand, within RR42_RS28185at 1680.188 kb on + strand, within RR42_RS28185at 1680.189 kb on - strand, within RR42_RS28185at 1680.189 kb on - strand, within RR42_RS28185at 1680.189 kb on - strand, within RR42_RS28185at 1680.218 kb on + strand, within RR42_RS28185at 1680.218 kb on + strand, within RR42_RS28185at 1680.219 kb on - strand, within RR42_RS28185at 1680.459 kb on - strand, within RR42_RS28185at 1680.624 kb on + strand, within RR42_RS28185at 1680.755 kb on + strand, within RR42_RS28185at 1680.755 kb on + strand, within RR42_RS28185at 1680.755 kb on + strand, within RR42_RS28185at 1680.755 kb on + strand, within RR42_RS28185at 1680.755 kb on + strand, within RR42_RS28185at 1680.756 kb on - strand, within RR42_RS28185at 1680.941 kb on + strand, within RR42_RS28185at 1680.941 kb on + strand, within RR42_RS28185at 1680.942 kb on - strand, within RR42_RS28185at 1681.139 kb on + strand, within RR42_RS28185at 1681.140 kb on - strand, within RR42_RS28185at 1681.140 kb on - strand, within RR42_RS28185at 1681.320 kb on - strandat 1681.320 kb on - strandat 1681.320 kb on - strandat 1681.322 kb on + strandat 1681.322 kb on + strandat 1681.323 kb on - strandat 1681.464 kb on + strandat 1681.852 kb on + strand, within RR42_RS28190at 1681.878 kb on + strand, within RR42_RS28190at 1681.928 kb on + strandat 1681.928 kb on + strandat 1681.928 kb on + strandat 1681.929 kb on - strandat 1681.935 kb on - strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.983 kb on - strandat 1681.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,679,210 + -0.0
1,679,210 + RR42_RS28180 0.24 +0.3
1,679,372 + RR42_RS28180 0.42 +1.2
1,679,372 + RR42_RS28180 0.42 -0.1
1,679,372 + RR42_RS28180 0.42 -0.4
1,679,373 - RR42_RS28180 0.42 -0.8
1,679,403 - RR42_RS28180 0.45 -0.4
1,679,530 + RR42_RS28180 0.59 +0.0
1,679,531 - RR42_RS28180 0.59 -0.5
1,679,687 - RR42_RS28180 0.77 +0.1
1,679,838 - +0.3
1,679,931 + +0.1
1,680,040 + -1.5
1,680,041 - -0.9
1,680,109 + +0.1
1,680,110 - -1.2
1,680,188 + RR42_RS28185 0.15 -2.6
1,680,188 + RR42_RS28185 0.15 -0.1
1,680,189 - RR42_RS28185 0.15 +0.1
1,680,189 - RR42_RS28185 0.15 +0.7
1,680,189 - RR42_RS28185 0.15 +0.4
1,680,218 + RR42_RS28185 0.17 +0.1
1,680,218 + RR42_RS28185 0.17 +0.7
1,680,219 - RR42_RS28185 0.17 +0.6
1,680,459 - RR42_RS28185 0.33 +0.4
1,680,624 + RR42_RS28185 0.45 -0.5
1,680,755 + RR42_RS28185 0.54 +0.3
1,680,755 + RR42_RS28185 0.54 +0.4
1,680,755 + RR42_RS28185 0.54 -0.3
1,680,755 + RR42_RS28185 0.54 -0.1
1,680,755 + RR42_RS28185 0.54 +2.0
1,680,756 - RR42_RS28185 0.54 +0.5
1,680,941 + RR42_RS28185 0.67 +0.2
1,680,941 + RR42_RS28185 0.67 +2.3
1,680,942 - RR42_RS28185 0.67 -0.1
1,681,139 + RR42_RS28185 0.80 -0.4
1,681,140 - RR42_RS28185 0.80 -1.0
1,681,140 - RR42_RS28185 0.80 -0.4
1,681,320 - -0.4
1,681,320 - -0.4
1,681,320 - -0.2
1,681,322 + +0.5
1,681,322 + -0.7
1,681,323 - -2.1
1,681,464 + -0.3
1,681,852 + RR42_RS28190 0.79 +0.3
1,681,878 + RR42_RS28190 0.84 -1.4
1,681,928 + -0.8
1,681,928 + -0.5
1,681,928 + -0.1
1,681,929 - -0.1
1,681,935 - +0.2
1,681,982 + +0.3
1,681,982 + +0.7
1,681,982 + -0.2
1,681,982 + -0.1
1,681,982 + -0.4
1,681,983 - -0.9
1,681,983 - +0.1

Or see this region's nucleotide sequence