Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28180 and RR42_RS28185 are separated by 82 nucleotides RR42_RS28185 and RR42_RS28190 are separated by 84 nucleotides RR42_RS28190 and RR42_RS28195 are separated by 73 nucleotides
RR42_RS28180: RR42_RS28180 - membrane protein, at 1,678,999 to 1,679,895
_RS28180
RR42_RS28185: RR42_RS28185 - GntR family transcriptional regulator, at 1,679,978 to 1,681,423
_RS28185
RR42_RS28190: RR42_RS28190 - MerR family transcriptional regulator, at 1,681,508 to 1,681,945
_RS28190
RR42_RS28195: RR42_RS28195 - SAM-dependent methyltransferase, at 1,682,019 to 1,682,897
_RS28195
Position (kb)
1679
1680
1681
1682 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1679.210 kb on + strand at 1679.210 kb on + strand, within RR42_RS28180 at 1679.372 kb on + strand, within RR42_RS28180 at 1679.372 kb on + strand, within RR42_RS28180 at 1679.372 kb on + strand, within RR42_RS28180 at 1679.373 kb on - strand, within RR42_RS28180 at 1679.403 kb on - strand, within RR42_RS28180 at 1679.530 kb on + strand, within RR42_RS28180 at 1679.531 kb on - strand, within RR42_RS28180 at 1679.687 kb on - strand, within RR42_RS28180 at 1679.838 kb on - strand at 1679.931 kb on + strand at 1680.040 kb on + strand at 1680.041 kb on - strand at 1680.109 kb on + strand at 1680.110 kb on - strand at 1680.188 kb on + strand, within RR42_RS28185 at 1680.188 kb on + strand, within RR42_RS28185 at 1680.189 kb on - strand, within RR42_RS28185 at 1680.189 kb on - strand, within RR42_RS28185 at 1680.189 kb on - strand, within RR42_RS28185 at 1680.218 kb on + strand, within RR42_RS28185 at 1680.218 kb on + strand, within RR42_RS28185 at 1680.219 kb on - strand, within RR42_RS28185 at 1680.459 kb on - strand, within RR42_RS28185 at 1680.624 kb on + strand, within RR42_RS28185 at 1680.755 kb on + strand, within RR42_RS28185 at 1680.755 kb on + strand, within RR42_RS28185 at 1680.755 kb on + strand, within RR42_RS28185 at 1680.755 kb on + strand, within RR42_RS28185 at 1680.755 kb on + strand, within RR42_RS28185 at 1680.756 kb on - strand, within RR42_RS28185 at 1680.941 kb on + strand, within RR42_RS28185 at 1680.941 kb on + strand, within RR42_RS28185 at 1680.942 kb on - strand, within RR42_RS28185 at 1681.139 kb on + strand, within RR42_RS28185 at 1681.140 kb on - strand, within RR42_RS28185 at 1681.140 kb on - strand, within RR42_RS28185 at 1681.320 kb on - strand at 1681.320 kb on - strand at 1681.320 kb on - strand at 1681.322 kb on + strand at 1681.322 kb on + strand at 1681.323 kb on - strand at 1681.464 kb on + strand at 1681.852 kb on + strand, within RR42_RS28190 at 1681.878 kb on + strand, within RR42_RS28190 at 1681.928 kb on + strand at 1681.928 kb on + strand at 1681.928 kb on + strand at 1681.929 kb on - strand at 1681.935 kb on - strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.983 kb on - strand at 1681.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,679,210 + -0.0 1,679,210 + RR42_RS28180 0.24 +0.3 1,679,372 + RR42_RS28180 0.42 +1.2 1,679,372 + RR42_RS28180 0.42 -0.1 1,679,372 + RR42_RS28180 0.42 -0.4 1,679,373 - RR42_RS28180 0.42 -0.8 1,679,403 - RR42_RS28180 0.45 -0.4 1,679,530 + RR42_RS28180 0.59 +0.0 1,679,531 - RR42_RS28180 0.59 -0.5 1,679,687 - RR42_RS28180 0.77 +0.1 1,679,838 - +0.3 1,679,931 + +0.1 1,680,040 + -1.5 1,680,041 - -0.9 1,680,109 + +0.1 1,680,110 - -1.2 1,680,188 + RR42_RS28185 0.15 -2.6 1,680,188 + RR42_RS28185 0.15 -0.1 1,680,189 - RR42_RS28185 0.15 +0.1 1,680,189 - RR42_RS28185 0.15 +0.7 1,680,189 - RR42_RS28185 0.15 +0.4 1,680,218 + RR42_RS28185 0.17 +0.1 1,680,218 + RR42_RS28185 0.17 +0.7 1,680,219 - RR42_RS28185 0.17 +0.6 1,680,459 - RR42_RS28185 0.33 +0.4 1,680,624 + RR42_RS28185 0.45 -0.5 1,680,755 + RR42_RS28185 0.54 +0.3 1,680,755 + RR42_RS28185 0.54 +0.4 1,680,755 + RR42_RS28185 0.54 -0.3 1,680,755 + RR42_RS28185 0.54 -0.1 1,680,755 + RR42_RS28185 0.54 +2.0 1,680,756 - RR42_RS28185 0.54 +0.5 1,680,941 + RR42_RS28185 0.67 +0.2 1,680,941 + RR42_RS28185 0.67 +2.3 1,680,942 - RR42_RS28185 0.67 -0.1 1,681,139 + RR42_RS28185 0.80 -0.4 1,681,140 - RR42_RS28185 0.80 -1.0 1,681,140 - RR42_RS28185 0.80 -0.4 1,681,320 - -0.4 1,681,320 - -0.4 1,681,320 - -0.2 1,681,322 + +0.5 1,681,322 + -0.7 1,681,323 - -2.1 1,681,464 + -0.3 1,681,852 + RR42_RS28190 0.79 +0.3 1,681,878 + RR42_RS28190 0.84 -1.4 1,681,928 + -0.8 1,681,928 + -0.5 1,681,928 + -0.1 1,681,929 - -0.1 1,681,935 - +0.2 1,681,982 + +0.3 1,681,982 + +0.7 1,681,982 + -0.2 1,681,982 + -0.1 1,681,982 + -0.4 1,681,983 - -0.9 1,681,983 - +0.1
Or see this region's nucleotide sequence