Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23265 and RR42_RS23270 are separated by 232 nucleotides RR42_RS23270 and RR42_RS23275 are separated by 82 nucleotides
RR42_RS23265: RR42_RS23265 - MFS transporter, at 550,015 to 551,232
_RS23265
RR42_RS23270: RR42_RS23270 - pyridoxamine 5'-phosphate oxidase, at 551,465 to 551,980
_RS23270
RR42_RS23275: RR42_RS23275 - 2-nitropropane dioxygenase, at 552,063 to 553,070
_RS23275
Position (kb) 551
552 Strain fitness (log2 ratio) -1
0
1
2 at 550.511 kb on + strand, within RR42_RS23265 at 550.511 kb on + strand, within RR42_RS23265 at 550.719 kb on + strand, within RR42_RS23265 at 550.720 kb on - strand, within RR42_RS23265 at 550.720 kb on - strand, within RR42_RS23265 at 550.983 kb on - strand, within RR42_RS23265 at 551.268 kb on - strand at 551.276 kb on + strand at 551.313 kb on + strand at 551.336 kb on - strand at 551.360 kb on - strand at 551.362 kb on - strand at 551.399 kb on + strand at 551.400 kb on - strand at 551.511 kb on + strand at 551.671 kb on - strand, within RR42_RS23270 at 551.803 kb on - strand, within RR42_RS23270 at 551.866 kb on + strand, within RR42_RS23270 at 551.905 kb on - strand, within RR42_RS23270 at 551.980 kb on + strand at 551.980 kb on + strand at 552.028 kb on + strand at 552.028 kb on + strand at 552.029 kb on - strand at 552.035 kb on - strand at 552.035 kb on - strand at 552.235 kb on - strand, within RR42_RS23275 at 552.259 kb on + strand, within RR42_RS23275 at 552.259 kb on + strand, within RR42_RS23275 at 552.260 kb on - strand, within RR42_RS23275 at 552.334 kb on + strand, within RR42_RS23275 at 552.334 kb on + strand, within RR42_RS23275 at 552.334 kb on + strand, within RR42_RS23275 at 552.335 kb on - strand, within RR42_RS23275 at 552.335 kb on - strand, within RR42_RS23275 at 552.368 kb on - strand, within RR42_RS23275 at 552.409 kb on + strand, within RR42_RS23275 at 552.410 kb on - strand, within RR42_RS23275 at 552.461 kb on - strand, within RR42_RS23275 at 552.510 kb on - strand, within RR42_RS23275 at 552.510 kb on - strand, within RR42_RS23275 at 552.513 kb on + strand, within RR42_RS23275 at 552.513 kb on + strand, within RR42_RS23275 at 552.513 kb on + strand, within RR42_RS23275 at 552.514 kb on - strand, within RR42_RS23275 at 552.701 kb on - strand, within RR42_RS23275 at 552.755 kb on + strand, within RR42_RS23275 at 552.969 kb on + strand, within RR42_RS23275
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 550,511 + RR42_RS23265 0.41 +0.4 550,511 + RR42_RS23265 0.41 -0.5 550,719 + RR42_RS23265 0.58 +0.6 550,720 - RR42_RS23265 0.58 +0.3 550,720 - RR42_RS23265 0.58 +0.5 550,983 - RR42_RS23265 0.79 +1.3 551,268 - -1.5 551,276 + +0.1 551,313 + -0.9 551,336 - +1.8 551,360 - +0.5 551,362 - -0.7 551,399 + +0.4 551,400 - +0.3 551,511 + +1.3 551,671 - RR42_RS23270 0.40 +1.0 551,803 - RR42_RS23270 0.66 +1.2 551,866 + RR42_RS23270 0.78 +0.1 551,905 - RR42_RS23270 0.85 +0.4 551,980 + -0.8 551,980 + +0.4 552,028 + +0.3 552,028 + +0.0 552,029 - -0.2 552,035 - +0.2 552,035 - -0.1 552,235 - RR42_RS23275 0.17 -1.1 552,259 + RR42_RS23275 0.19 +0.1 552,259 + RR42_RS23275 0.19 +0.1 552,260 - RR42_RS23275 0.20 -0.2 552,334 + RR42_RS23275 0.27 -0.5 552,334 + RR42_RS23275 0.27 +1.7 552,334 + RR42_RS23275 0.27 -0.5 552,335 - RR42_RS23275 0.27 +0.7 552,335 - RR42_RS23275 0.27 +0.4 552,368 - RR42_RS23275 0.30 -0.8 552,409 + RR42_RS23275 0.34 -0.8 552,410 - RR42_RS23275 0.34 +0.7 552,461 - RR42_RS23275 0.39 -1.0 552,510 - RR42_RS23275 0.44 -0.2 552,510 - RR42_RS23275 0.44 -0.2 552,513 + RR42_RS23275 0.45 +0.6 552,513 + RR42_RS23275 0.45 +0.7 552,513 + RR42_RS23275 0.45 +1.3 552,514 - RR42_RS23275 0.45 +0.1 552,701 - RR42_RS23275 0.63 +0.2 552,755 + RR42_RS23275 0.69 -0.6 552,969 + RR42_RS23275 0.90 +0.4
Or see this region's nucleotide sequence