Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20635 and RR42_RS20640 are separated by 27 nucleotides RR42_RS20640 and RR42_RS20645 are separated by 447 nucleotides
RR42_RS20635: RR42_RS20635 - iron ABC transporter substrate-binding protein, at 4,478,867 to 4,479,982
_RS20635
RR42_RS20640: RR42_RS20640 - TetR family transcriptional regulator, at 4,480,010 to 4,480,765
_RS20640
RR42_RS20645: RR42_RS20645 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 4,481,213 to 4,482,445
_RS20645
Position (kb) 4480
4481 Strain fitness (log2 ratio) -2
-1
0
1 at 4479.065 kb on + strand, within RR42_RS20635 at 4479.173 kb on + strand, within RR42_RS20635 at 4479.335 kb on + strand, within RR42_RS20635 at 4479.440 kb on + strand, within RR42_RS20635 at 4479.440 kb on + strand, within RR42_RS20635 at 4479.440 kb on + strand, within RR42_RS20635 at 4479.440 kb on + strand, within RR42_RS20635 at 4479.440 kb on + strand, within RR42_RS20635 at 4479.441 kb on - strand, within RR42_RS20635 at 4479.441 kb on - strand, within RR42_RS20635 at 4479.441 kb on - strand, within RR42_RS20635 at 4479.441 kb on - strand, within RR42_RS20635 at 4479.441 kb on - strand, within RR42_RS20635 at 4479.441 kb on - strand, within RR42_RS20635 at 4479.443 kb on - strand, within RR42_RS20635 at 4479.468 kb on - strand, within RR42_RS20635 at 4479.468 kb on - strand, within RR42_RS20635 at 4479.512 kb on + strand, within RR42_RS20635 at 4479.513 kb on - strand, within RR42_RS20635 at 4479.608 kb on + strand, within RR42_RS20635 at 4479.627 kb on - strand, within RR42_RS20635 at 4479.627 kb on - strand, within RR42_RS20635 at 4479.627 kb on - strand, within RR42_RS20635 at 4479.683 kb on + strand, within RR42_RS20635 at 4479.816 kb on - strand, within RR42_RS20635 at 4479.915 kb on + strand at 4479.916 kb on - strand at 4479.916 kb on - strand at 4480.131 kb on + strand, within RR42_RS20640 at 4480.131 kb on + strand, within RR42_RS20640 at 4480.131 kb on + strand, within RR42_RS20640 at 4480.131 kb on + strand, within RR42_RS20640 at 4480.132 kb on - strand, within RR42_RS20640 at 4480.132 kb on - strand, within RR42_RS20640 at 4480.132 kb on - strand, within RR42_RS20640 at 4480.132 kb on - strand, within RR42_RS20640 at 4480.879 kb on - strand at 4480.879 kb on - strand at 4480.879 kb on - strand at 4480.879 kb on - strand at 4480.879 kb on - strand at 4480.879 kb on - strand at 4480.881 kb on - strand at 4480.883 kb on - strand at 4480.883 kb on - strand at 4480.937 kb on + strand at 4480.938 kb on - strand at 4480.940 kb on - strand at 4481.045 kb on + strand at 4481.046 kb on - strand at 4481.096 kb on + strand at 4481.097 kb on - strand at 4481.103 kb on - strand at 4481.103 kb on - strand at 4481.209 kb on - strand at 4481.230 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,479,065 + RR42_RS20635 0.18 +0.5 4,479,173 + RR42_RS20635 0.27 +0.5 4,479,335 + RR42_RS20635 0.42 -0.6 4,479,440 + RR42_RS20635 0.51 +0.2 4,479,440 + RR42_RS20635 0.51 -0.3 4,479,440 + RR42_RS20635 0.51 -0.2 4,479,440 + RR42_RS20635 0.51 +0.5 4,479,440 + RR42_RS20635 0.51 +0.4 4,479,441 - RR42_RS20635 0.51 +0.1 4,479,441 - RR42_RS20635 0.51 -0.1 4,479,441 - RR42_RS20635 0.51 +0.3 4,479,441 - RR42_RS20635 0.51 -0.0 4,479,441 - RR42_RS20635 0.51 +0.1 4,479,441 - RR42_RS20635 0.51 +0.1 4,479,443 - RR42_RS20635 0.52 -0.2 4,479,468 - RR42_RS20635 0.54 -0.3 4,479,468 - RR42_RS20635 0.54 -1.1 4,479,512 + RR42_RS20635 0.58 +0.4 4,479,513 - RR42_RS20635 0.58 -0.7 4,479,608 + RR42_RS20635 0.66 -0.2 4,479,627 - RR42_RS20635 0.68 -1.4 4,479,627 - RR42_RS20635 0.68 +1.0 4,479,627 - RR42_RS20635 0.68 -0.1 4,479,683 + RR42_RS20635 0.73 -0.2 4,479,816 - RR42_RS20635 0.85 +1.1 4,479,915 + -0.3 4,479,916 - -2.4 4,479,916 - +0.5 4,480,131 + RR42_RS20640 0.16 +1.5 4,480,131 + RR42_RS20640 0.16 +0.5 4,480,131 + RR42_RS20640 0.16 +0.2 4,480,131 + RR42_RS20640 0.16 -0.5 4,480,132 - RR42_RS20640 0.16 +1.4 4,480,132 - RR42_RS20640 0.16 -0.1 4,480,132 - RR42_RS20640 0.16 -0.6 4,480,132 - RR42_RS20640 0.16 +1.2 4,480,879 - +0.2 4,480,879 - +0.4 4,480,879 - -1.1 4,480,879 - +0.4 4,480,879 - +1.2 4,480,879 - -0.2 4,480,881 - +1.7 4,480,883 - +0.5 4,480,883 - -0.1 4,480,937 + -1.1 4,480,938 - +0.5 4,480,940 - +0.3 4,481,045 + +0.2 4,481,046 - +0.6 4,481,096 + +0.1 4,481,097 - -0.1 4,481,103 - +0.4 4,481,103 - +0.8 4,481,209 - -0.2 4,481,230 + +0.2
Or see this region's nucleotide sequence