Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19860

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19850 and RR42_RS19855 are separated by 121 nucleotidesRR42_RS19855 and RR42_RS19860 are separated by 51 nucleotidesRR42_RS19860 and RR42_RS19865 are separated by 88 nucleotides RR42_RS19850: RR42_RS19850 - glyoxylate carboligase, at 4,284,878 to 4,286,653 _RS19850 RR42_RS19855: RR42_RS19855 - hydroxypyruvate isomerase, at 4,286,775 to 4,287,557 _RS19855 RR42_RS19860: RR42_RS19860 - tartronate semialdehyde reductase, at 4,287,609 to 4,288,535 _RS19860 RR42_RS19865: RR42_RS19865 - hydroxypyruvate reductase, at 4,288,624 to 4,289,937 _RS19865 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -1 0 1at 4286.651 kb on + strandat 4286.652 kb on - strandat 4286.652 kb on - strandat 4287.051 kb on + strand, within RR42_RS19855at 4287.051 kb on + strand, within RR42_RS19855at 4287.294 kb on + strand, within RR42_RS19855at 4287.303 kb on + strand, within RR42_RS19855at 4287.312 kb on + strand, within RR42_RS19855at 4287.313 kb on - strand, within RR42_RS19855at 4287.313 kb on - strand, within RR42_RS19855at 4287.313 kb on - strand, within RR42_RS19855at 4287.313 kb on - strand, within RR42_RS19855at 4287.496 kb on - strandat 4287.555 kb on + strandat 4287.636 kb on - strandat 4287.981 kb on + strand, within RR42_RS19860at 4288.313 kb on + strand, within RR42_RS19860at 4288.533 kb on + strandat 4288.574 kb on - strandat 4288.793 kb on + strand, within RR42_RS19865at 4288.793 kb on + strand, within RR42_RS19865at 4289.108 kb on + strand, within RR42_RS19865at 4289.109 kb on - strand, within RR42_RS19865at 4289.109 kb on - strand, within RR42_RS19865at 4289.320 kb on + strand, within RR42_RS19865at 4289.320 kb on + strand, within RR42_RS19865at 4289.321 kb on - strand, within RR42_RS19865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,286,651 + -1.0
4,286,652 - -0.8
4,286,652 - +0.1
4,287,051 + RR42_RS19855 0.35 +0.0
4,287,051 + RR42_RS19855 0.35 -0.7
4,287,294 + RR42_RS19855 0.66 -0.8
4,287,303 + RR42_RS19855 0.67 -0.5
4,287,312 + RR42_RS19855 0.69 -0.2
4,287,313 - RR42_RS19855 0.69 +0.5
4,287,313 - RR42_RS19855 0.69 -0.7
4,287,313 - RR42_RS19855 0.69 +0.6
4,287,313 - RR42_RS19855 0.69 -0.4
4,287,496 - +0.2
4,287,555 + +0.7
4,287,636 - +0.5
4,287,981 + RR42_RS19860 0.40 +1.2
4,288,313 + RR42_RS19860 0.76 -0.8
4,288,533 + -0.6
4,288,574 - +1.0
4,288,793 + RR42_RS19865 0.13 +0.0
4,288,793 + RR42_RS19865 0.13 -0.1
4,289,108 + RR42_RS19865 0.37 -0.3
4,289,109 - RR42_RS19865 0.37 +0.5
4,289,109 - RR42_RS19865 0.37 +0.4
4,289,320 + RR42_RS19865 0.53 +0.5
4,289,320 + RR42_RS19865 0.53 -0.3
4,289,321 - RR42_RS19865 0.53 +0.3

Or see this region's nucleotide sequence