Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15940

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15935 and RR42_RS15940 are separated by 93 nucleotidesRR42_RS15940 and RR42_RS15945 are separated by 142 nucleotidesRR42_RS15945 and RR42_RS15950 are separated by 192 nucleotides RR42_RS15935: RR42_RS15935 - C4-dicarboxylate ABC transporter, at 3,446,451 to 3,448,199 _RS15935 RR42_RS15940: RR42_RS15940 - lysine decarboxylase, at 3,448,293 to 3,450,557 _RS15940 RR42_RS15945: RR42_RS15945 - deoxycytidine triphosphate deaminase, at 3,450,700 to 3,451,266 _RS15945 RR42_RS15950: RR42_RS15950 - formate dehydrogenase, at 3,451,459 to 3,452,289 _RS15950 Position (kb) 3448 3449 3450 3451Strain fitness (log2 ratio) -2 -1 0 1at 3447.317 kb on + strand, within RR42_RS15935at 3447.317 kb on + strand, within RR42_RS15935at 3447.317 kb on + strand, within RR42_RS15935at 3447.317 kb on + strand, within RR42_RS15935at 3447.317 kb on + strand, within RR42_RS15935at 3447.317 kb on + strand, within RR42_RS15935at 3447.318 kb on - strand, within RR42_RS15935at 3447.318 kb on - strand, within RR42_RS15935at 3447.318 kb on - strand, within RR42_RS15935at 3447.321 kb on + strand, within RR42_RS15935at 3447.321 kb on + strand, within RR42_RS15935at 3447.321 kb on + strand, within RR42_RS15935at 3447.321 kb on + strand, within RR42_RS15935at 3447.322 kb on - strand, within RR42_RS15935at 3447.322 kb on - strand, within RR42_RS15935at 3447.322 kb on - strand, within RR42_RS15935at 3447.322 kb on - strand, within RR42_RS15935at 3447.322 kb on - strand, within RR42_RS15935at 3447.322 kb on - strand, within RR42_RS15935at 3447.326 kb on + strand, within RR42_RS15935at 3447.326 kb on + strand, within RR42_RS15935at 3447.414 kb on + strand, within RR42_RS15935at 3447.487 kb on - strand, within RR42_RS15935at 3447.487 kb on - strand, within RR42_RS15935at 3447.487 kb on - strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.593 kb on + strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.594 kb on - strand, within RR42_RS15935at 3447.873 kb on + strand, within RR42_RS15935at 3447.874 kb on - strand, within RR42_RS15935at 3447.918 kb on + strand, within RR42_RS15935at 3447.918 kb on + strand, within RR42_RS15935at 3447.918 kb on + strand, within RR42_RS15935at 3447.918 kb on + strand, within RR42_RS15935at 3447.919 kb on - strand, within RR42_RS15935at 3447.919 kb on - strand, within RR42_RS15935at 3447.919 kb on - strand, within RR42_RS15935at 3448.025 kb on + strandat 3448.025 kb on + strandat 3448.026 kb on - strandat 3448.026 kb on - strandat 3448.026 kb on - strandat 3448.197 kb on + strandat 3448.201 kb on + strandat 3448.295 kb on - strandat 3448.295 kb on - strandat 3448.295 kb on - strandat 3450.694 kb on - strandat 3450.694 kb on - strandat 3451.388 kb on + strandat 3451.389 kb on - strandat 3451.389 kb on - strandat 3451.389 kb on - strandat 3451.389 kb on - strandat 3451.389 kb on - strandat 3451.389 kb on - strandat 3451.416 kb on - strandat 3451.511 kb on + strandat 3451.512 kb on - strandat 3451.512 kb on - strandat 3451.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,447,317 + RR42_RS15935 0.50 +0.9
3,447,317 + RR42_RS15935 0.50 +0.1
3,447,317 + RR42_RS15935 0.50 -0.4
3,447,317 + RR42_RS15935 0.50 +0.3
3,447,317 + RR42_RS15935 0.50 -2.3
3,447,317 + RR42_RS15935 0.50 +0.8
3,447,318 - RR42_RS15935 0.50 +0.3
3,447,318 - RR42_RS15935 0.50 -2.5
3,447,318 - RR42_RS15935 0.50 -0.1
3,447,321 + RR42_RS15935 0.50 +0.1
3,447,321 + RR42_RS15935 0.50 +1.3
3,447,321 + RR42_RS15935 0.50 +1.1
3,447,321 + RR42_RS15935 0.50 +0.0
3,447,322 - RR42_RS15935 0.50 -1.0
3,447,322 - RR42_RS15935 0.50 +0.3
3,447,322 - RR42_RS15935 0.50 +0.1
3,447,322 - RR42_RS15935 0.50 -1.3
3,447,322 - RR42_RS15935 0.50 +0.1
3,447,322 - RR42_RS15935 0.50 +0.2
3,447,326 + RR42_RS15935 0.50 +0.2
3,447,326 + RR42_RS15935 0.50 +0.7
3,447,414 + RR42_RS15935 0.55 +0.1
3,447,487 - RR42_RS15935 0.59 -1.0
3,447,487 - RR42_RS15935 0.59 +0.3
3,447,487 - RR42_RS15935 0.59 -0.4
3,447,593 + RR42_RS15935 0.65 -0.6
3,447,593 + RR42_RS15935 0.65 +0.1
3,447,593 + RR42_RS15935 0.65 +0.3
3,447,593 + RR42_RS15935 0.65 -0.3
3,447,593 + RR42_RS15935 0.65 +0.5
3,447,593 + RR42_RS15935 0.65 +1.1
3,447,593 + RR42_RS15935 0.65 +0.1
3,447,593 + RR42_RS15935 0.65 -0.1
3,447,593 + RR42_RS15935 0.65 +0.4
3,447,593 + RR42_RS15935 0.65 +0.0
3,447,594 - RR42_RS15935 0.65 +0.3
3,447,594 - RR42_RS15935 0.65 -0.2
3,447,594 - RR42_RS15935 0.65 +0.4
3,447,594 - RR42_RS15935 0.65 -0.7
3,447,594 - RR42_RS15935 0.65 -0.4
3,447,594 - RR42_RS15935 0.65 -0.1
3,447,594 - RR42_RS15935 0.65 +0.3
3,447,594 - RR42_RS15935 0.65 -1.5
3,447,594 - RR42_RS15935 0.65 +0.2
3,447,594 - RR42_RS15935 0.65 +0.4
3,447,873 + RR42_RS15935 0.81 +0.3
3,447,874 - RR42_RS15935 0.81 +0.6
3,447,918 + RR42_RS15935 0.84 +0.4
3,447,918 + RR42_RS15935 0.84 -1.3
3,447,918 + RR42_RS15935 0.84 -0.3
3,447,918 + RR42_RS15935 0.84 -0.1
3,447,919 - RR42_RS15935 0.84 -1.3
3,447,919 - RR42_RS15935 0.84 -0.3
3,447,919 - RR42_RS15935 0.84 +0.0
3,448,025 + +0.5
3,448,025 + +0.6
3,448,026 - -0.2
3,448,026 - -0.0
3,448,026 - +0.8
3,448,197 + -1.0
3,448,201 + +0.7
3,448,295 - -1.2
3,448,295 - -1.0
3,448,295 - -0.1
3,450,694 - -0.4
3,450,694 - -1.5
3,451,388 + -0.7
3,451,389 - +0.6
3,451,389 - +0.5
3,451,389 - -0.5
3,451,389 - -0.9
3,451,389 - +0.2
3,451,389 - -1.5
3,451,416 - -1.0
3,451,511 + -0.7
3,451,512 - -0.1
3,451,512 - -0.4
3,451,512 - +1.0

Or see this region's nucleotide sequence