Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15935 and RR42_RS15940 are separated by 93 nucleotides RR42_RS15940 and RR42_RS15945 are separated by 142 nucleotides RR42_RS15945 and RR42_RS15950 are separated by 192 nucleotides
RR42_RS15935: RR42_RS15935 - C4-dicarboxylate ABC transporter, at 3,446,451 to 3,448,199
_RS15935
RR42_RS15940: RR42_RS15940 - lysine decarboxylase, at 3,448,293 to 3,450,557
_RS15940
RR42_RS15945: RR42_RS15945 - deoxycytidine triphosphate deaminase, at 3,450,700 to 3,451,266
_RS15945
RR42_RS15950: RR42_RS15950 - formate dehydrogenase, at 3,451,459 to 3,452,289
_RS15950
Position (kb)
3448
3449
3450
3451 Strain fitness (log2 ratio)
-2
-1
0
1 at 3447.317 kb on + strand, within RR42_RS15935 at 3447.317 kb on + strand, within RR42_RS15935 at 3447.317 kb on + strand, within RR42_RS15935 at 3447.317 kb on + strand, within RR42_RS15935 at 3447.317 kb on + strand, within RR42_RS15935 at 3447.317 kb on + strand, within RR42_RS15935 at 3447.318 kb on - strand, within RR42_RS15935 at 3447.318 kb on - strand, within RR42_RS15935 at 3447.318 kb on - strand, within RR42_RS15935 at 3447.321 kb on + strand, within RR42_RS15935 at 3447.321 kb on + strand, within RR42_RS15935 at 3447.321 kb on + strand, within RR42_RS15935 at 3447.321 kb on + strand, within RR42_RS15935 at 3447.322 kb on - strand, within RR42_RS15935 at 3447.322 kb on - strand, within RR42_RS15935 at 3447.322 kb on - strand, within RR42_RS15935 at 3447.322 kb on - strand, within RR42_RS15935 at 3447.322 kb on - strand, within RR42_RS15935 at 3447.322 kb on - strand, within RR42_RS15935 at 3447.326 kb on + strand, within RR42_RS15935 at 3447.326 kb on + strand, within RR42_RS15935 at 3447.414 kb on + strand, within RR42_RS15935 at 3447.487 kb on - strand, within RR42_RS15935 at 3447.487 kb on - strand, within RR42_RS15935 at 3447.487 kb on - strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.593 kb on + strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.594 kb on - strand, within RR42_RS15935 at 3447.873 kb on + strand, within RR42_RS15935 at 3447.874 kb on - strand, within RR42_RS15935 at 3447.918 kb on + strand, within RR42_RS15935 at 3447.918 kb on + strand, within RR42_RS15935 at 3447.918 kb on + strand, within RR42_RS15935 at 3447.918 kb on + strand, within RR42_RS15935 at 3447.919 kb on - strand, within RR42_RS15935 at 3447.919 kb on - strand, within RR42_RS15935 at 3447.919 kb on - strand, within RR42_RS15935 at 3448.025 kb on + strand at 3448.025 kb on + strand at 3448.026 kb on - strand at 3448.026 kb on - strand at 3448.026 kb on - strand at 3448.197 kb on + strand at 3448.201 kb on + strand at 3448.295 kb on - strand at 3448.295 kb on - strand at 3448.295 kb on - strand at 3450.694 kb on - strand at 3450.694 kb on - strand at 3451.388 kb on + strand at 3451.389 kb on - strand at 3451.389 kb on - strand at 3451.389 kb on - strand at 3451.389 kb on - strand at 3451.389 kb on - strand at 3451.389 kb on - strand at 3451.416 kb on - strand at 3451.511 kb on + strand at 3451.512 kb on - strand at 3451.512 kb on - strand at 3451.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,447,317 + RR42_RS15935 0.50 +0.9 3,447,317 + RR42_RS15935 0.50 +0.1 3,447,317 + RR42_RS15935 0.50 -0.4 3,447,317 + RR42_RS15935 0.50 +0.3 3,447,317 + RR42_RS15935 0.50 -2.3 3,447,317 + RR42_RS15935 0.50 +0.8 3,447,318 - RR42_RS15935 0.50 +0.3 3,447,318 - RR42_RS15935 0.50 -2.5 3,447,318 - RR42_RS15935 0.50 -0.1 3,447,321 + RR42_RS15935 0.50 +0.1 3,447,321 + RR42_RS15935 0.50 +1.3 3,447,321 + RR42_RS15935 0.50 +1.1 3,447,321 + RR42_RS15935 0.50 +0.0 3,447,322 - RR42_RS15935 0.50 -1.0 3,447,322 - RR42_RS15935 0.50 +0.3 3,447,322 - RR42_RS15935 0.50 +0.1 3,447,322 - RR42_RS15935 0.50 -1.3 3,447,322 - RR42_RS15935 0.50 +0.1 3,447,322 - RR42_RS15935 0.50 +0.2 3,447,326 + RR42_RS15935 0.50 +0.2 3,447,326 + RR42_RS15935 0.50 +0.7 3,447,414 + RR42_RS15935 0.55 +0.1 3,447,487 - RR42_RS15935 0.59 -1.0 3,447,487 - RR42_RS15935 0.59 +0.3 3,447,487 - RR42_RS15935 0.59 -0.4 3,447,593 + RR42_RS15935 0.65 -0.6 3,447,593 + RR42_RS15935 0.65 +0.1 3,447,593 + RR42_RS15935 0.65 +0.3 3,447,593 + RR42_RS15935 0.65 -0.3 3,447,593 + RR42_RS15935 0.65 +0.5 3,447,593 + RR42_RS15935 0.65 +1.1 3,447,593 + RR42_RS15935 0.65 +0.1 3,447,593 + RR42_RS15935 0.65 -0.1 3,447,593 + RR42_RS15935 0.65 +0.4 3,447,593 + RR42_RS15935 0.65 +0.0 3,447,594 - RR42_RS15935 0.65 +0.3 3,447,594 - RR42_RS15935 0.65 -0.2 3,447,594 - RR42_RS15935 0.65 +0.4 3,447,594 - RR42_RS15935 0.65 -0.7 3,447,594 - RR42_RS15935 0.65 -0.4 3,447,594 - RR42_RS15935 0.65 -0.1 3,447,594 - RR42_RS15935 0.65 +0.3 3,447,594 - RR42_RS15935 0.65 -1.5 3,447,594 - RR42_RS15935 0.65 +0.2 3,447,594 - RR42_RS15935 0.65 +0.4 3,447,873 + RR42_RS15935 0.81 +0.3 3,447,874 - RR42_RS15935 0.81 +0.6 3,447,918 + RR42_RS15935 0.84 +0.4 3,447,918 + RR42_RS15935 0.84 -1.3 3,447,918 + RR42_RS15935 0.84 -0.3 3,447,918 + RR42_RS15935 0.84 -0.1 3,447,919 - RR42_RS15935 0.84 -1.3 3,447,919 - RR42_RS15935 0.84 -0.3 3,447,919 - RR42_RS15935 0.84 +0.0 3,448,025 + +0.5 3,448,025 + +0.6 3,448,026 - -0.2 3,448,026 - -0.0 3,448,026 - +0.8 3,448,197 + -1.0 3,448,201 + +0.7 3,448,295 - -1.2 3,448,295 - -1.0 3,448,295 - -0.1 3,450,694 - -0.4 3,450,694 - -1.5 3,451,388 + -0.7 3,451,389 - +0.6 3,451,389 - +0.5 3,451,389 - -0.5 3,451,389 - -0.9 3,451,389 - +0.2 3,451,389 - -1.5 3,451,416 - -1.0 3,451,511 + -0.7 3,451,512 - -0.1 3,451,512 - -0.4 3,451,512 - +1.0
Or see this region's nucleotide sequence